Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3222 145 2e-29 seq18797 96.9 1e-14 seq12018 86.0 2e-11 >seq3222 Length=1589 Score = 145 bits (160), Expect = 2e-29 Identities = 570/886 (64%), Gaps = 24/886 (3%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || | |||||| ||||||||| ||| ||| || |||||||| || | || || Sbjct 1521 TGTACTCGATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGT 1462 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | ||| | |||||| ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 1461 TGCTTTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGAC 1402 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCG 155808 || | ||| | |||||| | | || || ||| ||| || ||| ||| Sbjct 1401 TCTCAATGATCCATCCCCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCT 1342 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | | ||||||| ||| || | |||||| | ||||| || ||||| Sbjct 1341 TCTCATACTGCTCATACAGC-TTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGA 1283 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGA-TTACACGCTC--CATAAAT 155924 |||| || ||||| | || | |||| | | ||| | ||| ||| ||| || Sbjct 1282 CACTCATTTGGGCACATAAGAGTCCAA---TCGCCATCGACCTCCACCCTCTTCATGAAA 1226 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | ||| | |||| | ||||||||| | || || || | || || | ||||| Sbjct 1225 AGATCTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGG 1166 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 |||||| | || | ||| || | || || | || ||||| || || | || Sbjct 1165 TTCTTCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCG 1106 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||| || || ||| ||||| || || || || | | || | ||| |||| Sbjct 1105 AAGGAACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACT 1046 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | | ||| || | | || || || ||||| ||||| ||||||| | |||| Sbjct 1045 CGCAACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGAC 986 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGC 156219 | | | | || || || |||||||| |||| ||| || ||||| | | Sbjct 985 GCTCTGATTCTGTGCATGGCTATCCCAATACCTCCTG--CATGCTTCGAAATGATGGAAC 928 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 ||| ||| | || | || || |||||||| |||||||| | ||| || || | | Sbjct 927 ATTGCTTCAGCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAAC 868 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 |||| || | ||||| ||||||||||| ||||| || |||||||| ||||| | | Sbjct 867 ACGAGCTCATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGA 808 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT----TAGACCCG 156395 | || | | ||| |||| ||||| || | ||| |||| || | Sbjct 807 ACCACCTCTCTCCCATCAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAA---- 752 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 || || | ||| || | ||| |||| ||||| ||||||| |||||| |||| || Sbjct 751 TGGATTCCAATACTCACACGCATTAACATGTGCTGCAGACGCTCGACAATCCTTCCACCA 692 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 | || || ||||| ||||| || | ||||| || || ||| ||| Sbjct 691 ACTCTAAGGAGGTAGGCGCGCTCGATTGTTTTGAAGCC-AAAGAAT 647 >seq18797 Length=1843 Score = 96.9 bits (106), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || |||||||| | | |||||||| |||||| ||||||||||||| ||| | || Sbjct 1365 AACAAATCTCTTACTCTGCTTGCTCCAACTCCAACAAACATTTCTACAAAATCACTACCG 1306 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | ||||| || ||| || ||||| |||||| | || || || ||||| Sbjct 1305 CTTATGCTCAAGAATGGCACTCCTGCCTCTCCTGCCACTGCCTTGGCAAGTAGGGTCTTC 1246 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 |||||||||||||| || | || | | || ||||||| || || || ||| Sbjct 1245 CCTGTTCCAGGTGGCCCAACCAACAATGCACCTCTTGGTACCTTAGCTCCTAGTTTCTTG 1186 Query 289270 TATTTCTCAGG-GCTCTTTAAAAATTCTACAA 289300 ||| ||||||| ||| ||||| || || |||| Sbjct 1185 TATCTCTCAGGTGCT-TTTAAGAAATCAACAA 1155 >seq12018 Length=1726 Score = 86.0 bits (94), Expect = 2e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 |||||||| | | |||||||| ||||| ||||||||||||| ||| | | || Sbjct 1535 TCTCTTACCCTGCTTGCTCCAACTCCAACGAACATTTCTACAAAATCACTACCACTTATG 1594 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 | ||||| || ||| || ||||| |||||| | || || || ||||| |||||| Sbjct 1595 CTCAAGAATGGCACTCCTGCCTCTCCTGCCACTGCCTTTGCAAGTAGGGTCTTCCCTGTT 1654 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTT 289274 ||||||||||| | || | | || | ||||| || || ||||| | ||| ||| | Sbjct 1655 CCAGGTGGTCCAACCAACAATGCACCTCTCGGTACCTTAGCTCCCAG-TGTCTTGTATCT 1713 Query 289275 CTCAGG 289280 |||||| Sbjct 1714 CTCAGG 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471017695650866