Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25860 158 2e-32 seq10877 105 1e-16 seq6037 86.0 1e-10 >seq25860 Length=1350 Score = 158 bits (174), Expect = 2e-32 Identities = 232/329 (71%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| | ||| || ||| ||| || ||||| || || | |||| Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||||| |||||||| || ||||| || || || || ||||| Sbjct 880 TTGAGCCAGAAGATCGAGCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAAC 821 Query 794461 CCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 | ||||| | ||| || | | |||| || ||||||| || ||| Sbjct 820 GCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGC---------TGATCCAACGCAGGGCC 770 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || ||||| ||| |||| ||| | |||| |||| |||||| ||| ||| Sbjct 769 CAGTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTC 710 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 ||| |||| |||| |||||||||||| || || ||||||||||| |||||||||||| Sbjct 709 TCGTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTT 650 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||| |||||| || ||||| Sbjct 649 TCCATCATCATCTAGAAGCCGTAGAAGCA 621 >seq10877 Length=500 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| ||||| || | | Sbjct 294 TGTACTTGGTGACGGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCGAGTTCTCCTGGGA 235 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||| |||| ||| | ||| | | || || |||| |||||| | Sbjct 234 GGAGGAGTCTCACAGCGGACTGAACCTCTCTGCTGGAGAGAGTGTGCTTCTTGTTGTATC 175 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||||| | | || |||| || ||||||| || ||||||| Sbjct 174 TGACGAGCTTGCTGGCCTCTAGGGCAATCTTCTCGAAGATATCGTTGATGAATGAGTTCA 115 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| || | || ||||| || || ||||||||||||||||| || ||| Sbjct 114 TGATGTGCATGGACCTCTTTGAGATTCCAGTTTCTGGGTGCACCTGCTTGAGGACTCTGT 55 Query 1485710 A 1485710 | Sbjct 54 A 54 >seq6037 Length=2503 Score = 86.0 bits (94), Expect = 1e-10 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 794585 GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGG 794644 |||| |||| |||||||||||| || || ||||||||||| |||||||||||||| || Sbjct 2406 GGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCATCA 2465 Query 794645 CGATCTGGAAGCCATAAAAGCA 794666 |||| |||||| || ||||| Sbjct 2466 TCATCTAGAAGCCGTAGAAGCA 2487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911734203871502