Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq36835 91.5 1e-13 seq16860 91.5 1e-13 seq22711 87.8 1e-12 seq25823 82.4 6e-11 seq4283 82.4 6e-11 >seq36835 Length=903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || ||||| || |||| ||| || | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || || || | ||| ||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | || ||| || | ||||||||| Sbjct 553 CAGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAAC 612 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || |||||||| || || | || ||||| |||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq16860 Length=798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || ||||| || |||| ||| || | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || || || | ||| ||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | || ||| || | ||||||||| Sbjct 553 CAGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAAC 612 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || |||||||| || || | || ||||| |||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq22711 Length=903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || ||||| || |||| ||| || | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || || || | ||| ||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| || |||| || || || | ||||||||| Sbjct 553 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 612 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || |||||||| || || | || ||||| |||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq25823 Length=903 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || ||||| || |||| ||| || | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| || || || || | ||| ||||| Sbjct 493 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| || |||| || || || | ||||||||| Sbjct 553 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 612 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || |||||||| || || | || ||||| |||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq4283 Length=919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || ||||| || |||| ||| || | Sbjct 487 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 428 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| || || || || | ||| ||||| Sbjct 427 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 368 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| || |||| || || || | ||||||||| Sbjct 367 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 308 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || |||||||| || || | || ||||| |||| || |||| ||| Sbjct 307 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398670592910002