Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq36835 96.9 5e-15 seq16860 96.9 5e-15 seq25823 91.5 2e-13 seq22711 91.5 2e-13 seq4283 91.5 2e-13 seq26408 86.0 1e-11 >seq36835 Length=903 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || ||| | ||||| || | | || Sbjct 434 TGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCG 493 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || || || || || || || ||||| |||||||||| Sbjct 494 ACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAAC 553 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| ||||| || || || | || ||| ||||| || | || || || | Sbjct 554 AGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAACA 613 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 614 TCCAAAAGGAATCAACCCTCCATTTGGT 641 >seq16860 Length=798 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || ||| | ||||| || | | || Sbjct 434 TGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCG 493 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || || || || || || || ||||| |||||||||| Sbjct 494 ACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAAC 553 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| ||||| || || || | || ||| ||||| || | || || || | Sbjct 554 AGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAACA 613 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 614 TCCAAAAGGAATCAACCCTCCATTTGGT 641 >seq25823 Length=903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || ||| | ||||| || | | || Sbjct 434 TGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCG 493 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || || || || || || || ||||| |||||||||| Sbjct 494 ACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAAC 553 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| |||||||| || || | || || || || || | || || || | Sbjct 554 AGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAACA 613 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 614 TCCAAAAGGAATCAACCCTCCATTTGGT 641 >seq22711 Length=903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || ||| | ||||| || | | || Sbjct 434 TGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCG 493 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || || || || || || || ||||| |||||||||| Sbjct 494 ACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAAC 553 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| |||||||| || || | || || || || || | || || || | Sbjct 554 AGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAACA 613 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 614 TCCAAAAGGAATCAACCCTCCATTTGGT 641 >seq4283 Length=919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || ||| | ||||| || | | || Sbjct 486 TGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCG 427 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || || || || || || || ||||| |||||||||| Sbjct 426 ACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAAC 367 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| |||||||| || || | || || || || || | || || || | Sbjct 366 AGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAACA 307 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 306 TCCAAAAGGAATCAACCCTCCATTTGGT 279 >seq26408 Length=477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAAT 146114 || ||||| || || ||| | ||||| || | | ||| || ||| |||| || || Sbjct 15 ACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCGACACCATTGAAAACGTCAAGGCA 74 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 || || || || || || ||||| ||||||||||| |||||||| ||||| || || Sbjct 75 AAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAACAGAGACTCATCTTTGCTGGAAAG 134 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 || | || ||| ||||| || | || || || || ||||| ||||| || ||||| Sbjct 135 CAGCTTGAGGATGGCAGAACCTTGTCTGACTACAACATCCAAAAGGAATCAACCCTCCAT 194 Query 146235 TTAGT 146239 || || Sbjct 195 TTGGT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785749554920560