Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19111 132 4e-25 seq32716 129 4e-24 seq33948 113 3e-19 seq29885 107 1e-17 seq13023 104 2e-16 >seq19111 Length=2178 Score = 132 bits (146), Expect = 4e-25 Identities = 733/1159 (63%), Gaps = 28/1159 (2%) Strand=Plus/Minus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTT--CAGAGAATCTTCCGCGATTATTAGTA 281386 |||||| | | |||||||||||||| || | | ||| | ||| | |||||| Sbjct 1701 AGCTTCATTGACCATTCTCTCAATTTCGTCCTTGCTCAGA--CGTCCCTTCTCATTAGTG 1644 Query 281387 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 281446 ||||| || || || || ||| || ||| ||||| |||| |||||| | || || Sbjct 1643 ATAGTGATCTTATTAGACTTGCCAGTGCCTTTGTCAGCAGCAGACACATTCATGATTCCG 1584 Query 281447 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 281506 |||||||| | ||| || |||||||| || || || || ||||| ||||||| || || Sbjct 1583 TTGGCATCAATATCGAAAGTGACTTCGATCTGGGGAACACCTCTGGGAGCAGGGGGAATA 1524 Query 281507 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 |||||||| || ||| |||| || | | || || || || | ||| || || || Sbjct 1523 CCTTCCAAGTTGAATTTTCCAAGCATGTGGTTGTCCTTGGTCATGCTTCTCTCGCCTTCA 1464 Query 281567 AAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT 281626 | | | ||| || | | || || || | || || || || | ||| | | || Sbjct 1463 TAGACCTAGATGAGCACACCTGGCTGGTTGTCAGCGTAGGTAGTGAAGA-TCTAGCTCTT 1405 Query 281627 TTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTC 281685 | | || || || ||||| | || | ||||| | |||||||| || || Sbjct 1404 CTTCGTGGGGATGGTGGTGTTACGTGGGATGAGCACAGTCATGACTCCACCAGCAGTCTC 1345 Query 281686 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 281745 | || || |||||||| | || || | |||| | | | | |||| ||| Sbjct 1344 AATTCCGAGGGAAAGAGGGGCAACGTCGAGGAGGAGCAGGTCCTTCACGTTTTGGTCACC 1285 Query 281746 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 281805 | |||| || || || ||||| | |||||||| || || ||||| ||||| || || Sbjct 1284 CTCACCAGTCAGGATGGCAGCTTGCACGGCAGCACCGTAAGCCACAGCCTCATCTGGGTT 1225 Query 281806 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 281865 | | | || || | || |||||||| || | | || | ||| | |||||| Sbjct 1224 GATTGATCTGTTCAGAGTCTTGCCATTGAAGAAGTCAGTCAGCATTTGCTGGATCTTAGG 1165 Query 281866 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGA 281925 || | | || || || || | |||| ||| || | || ||| | ||| ||| Sbjct 1164 GATTCTTGTGGAACCACCGACAAGCACAACTTCGTGAATTTGACCTTTGGCAAGTCCTGA 1105 Query 281926 ATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC----TCTAAACAAGTC--TGAACA 281979 ||| | || ||||| ||||| || | || ||| |||||||| || || Sbjct 1104 GTCCTTGAGCACGTTTTCGACGGG----AGGCATGCACTTTCTGAACAAGTCCATGTTCA 1049 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGA 282039 | ||||||||| |||||||| | | ||| || | || || || || | Sbjct 1048 A--TTCTTCGAACTTAGCTCTTGAGATGTTGATGTTGAAGTCCTCACCCTCAGCCAGGGT 991 Query 282040 ATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGC 282099 || ||||| | || |||| | || ||| || | || || || || Sbjct 990 CTCGCACTCAATAGGAGCTTGATGGGCAGCAGAGAGAATTCTCTTTGCCTTCTCGCACTG 931 Query 282100 TGTCCTTAGTCTTC--GTAAGGCTTT-TGCTGATTGATTCAAATCTGTTTTATATTTTCT 282156 || || ||||||| ||| ||| | || | ||| | | || || | | || | Sbjct 930 GGTTCTCAGTCTTCTGGTA--GCTCTCTGGTTCTTGGTA-ATGTCGATTCCAGACTTCTT 874 Query 282157 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216 |||||| || | | || | ||||| | ||||| || || ||||| ||||| | Sbjct 873 CTTGAATTCAGCTATGCAGTACTCGACAAGTCTGTTATCGAAGTCCTCACCACCCAAATG 814 Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276 || | ||| || || | |||| || | || ||||||| || | ||| |||| Sbjct 813 GGTGTGTCCATTAGTTGCCTTCACTTCAAAGATACCCTCTTCAATAGTGAGCAGACTAAC 754 Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTT 282334 ||| || ||||| |||| ||| || || || || ||| | |||| || || || Sbjct 753 ATCGAAAGTGCCACCTCCCAAATCGAAGATGAGAACGTTCTTCTCTTG--CTGGGACTTC 696 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| || || |||| |||||||||||||| || || || ||||| | ||||| Sbjct 695 TTGTCAAGTCCGTATGCAATGGCAGCAGCAGTTGGCTCGTTGATGATTCTGAGCACATTC 636 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| ||| || || || || || ||||| || ||| || || || || Sbjct 635 AAGCCTGCAATAGCTCCAGCGTCCTTGGTTGCCTGTCTCTGGCTATCATTGAAGTAGGCT 576 Query 282455 GGAACAGTAATAACGGCAT 282473 || ||||| | ||| |||| Sbjct 575 GGCACAGTGACAACTGCAT 557 >seq32716 Length=2259 Score = 129 bits (142), Expect = 4e-24 Identities = 210/302 (70%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| ||||| |||||||| | |||| ||| | || || |||| || | ||| Sbjct 938 TCAAAGTCTTCTCCTCCCAAATGGGTATCTCCGGCAGTTGCGACGACTTCAAACACTCCG 879 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | || | | || |||| || || ||| || || |||| ||| || | | ||| Sbjct 878 TTATCGATGGTCAGGAGAGACACGTCGAAGGTACCTCCTCCCAAATCGAACACGATCACA 819 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 ||| | || |||| || ||||| | ||| || |||| |||||||||||||| ||| Sbjct 818 TTCTTCTCAC---CTTGTTTCTTATCCATACCGTAGGCAATTGCAGCAGCAGTTGGCTCA 762 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || || || | |||| || |||| ||| ||| ||||| ||||| ||||| | | Sbjct 761 TTGATGATCCTGAGTACATCCAGGCCAGAAATGAGTCCAGCATCCTTAGTAGCTTGGCGT 702 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || | |||||| || || ||||| |||||||| || |||| | |||||| | |||| | Sbjct 701 TGGGCATCGTTGAAGTAAGCAGGCACAGTAATGACTGCATGTTGCACTTCTCTGCCAAGA 642 Query 282494 TA 282495 || Sbjct 641 TA 640 >seq33948 Length=1889 Score = 113 bits (124), Expect = 3e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| || | || | |||||||||||| || ||||||||||||||| ||| | Sbjct 1477 TTGTCAAGTCCGAAAGCCAGAGCAGCAGCAGTAGGCTCATTAATAATTCTCTTAACTTCC 1536 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | | ||||| |||| ||||| ||||| |||||||| |||| ||| || || || ||| Sbjct 1537 AAATTTGCAATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCATTGAAGTAGGCA 1596 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTTT 282513 || ||||| ||||| || ||| | | | | ||||| || ||| || ||| |||| || Sbjct 1597 GGGACAGTGATAACAGCCTCTTTAATATTTCCTCCAAGAT-AGCTCTCTGCAGTTTCCTT 1655 Query 282514 CATTTT 282519 ||| || Sbjct 1656 CATCTT 1661 Score = 96.9 bits (106), Expect = 3e-14 Identities = 268/403 (67%), Gaps = 20/403 (5%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||||||| || |||| ||| || | |||||||| ||||| | ||| || |||||| Sbjct 562 GTTGATTTGTCTTTTGCAGACACGTTCATGATACCATTAGCATCAATATCGAAAGTGACT 621 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGT-TCCCAG 281529 || ||||| ||| ||||| |||| ||||| ||| |||| || | | ||| || Sbjct 622 TCGATTTGTGGGTGGCCTCTTGGAGCCATGGGGATACCT-CCAAGTTCGAACTCTCCAAG 680 Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589 | || ||||| || | | || ||||||| ||| | | ||| |||| || Sbjct 681 AACCTTGTTATCGGCAGCCATCTCTCTCTCACCCTGGAAGACCTTGATGCTAACCTTGGT 740 Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTC 281648 || || || | | ||||| || || ||| | || || || || || ||||||| Sbjct 741 CTGGTTGTCAGCAGCAGTTGAGAAGAC-CTGACTCTTCTTGGTCGGGATGGTAGTGTTTC 799 Query 281649 TATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 281708 | | || | || ||||| | ||| ||| || || | ||| ||||| || || || | Sbjct 800 TTTGGATCAACTTAGTCATCACACCTCCAAGGGTCTCAATACCCAGAGACAGTGGGGTAA 859 Query 281709 CATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCT 281767 |||| | || | ||||| ||||| |||| |||| ||| | || | Sbjct 860 CATCCAACAGCAAAATATCTTTGAC----TTCACCAGT---------AAGGACTGCACCC 906 Query 281768 TGAATAGCAGCACC-ATATGCAACAGCTTCATCAGGATTAACA 281809 |||| ||||||||| ||| || |||||||||||||| |||||| Sbjct 907 TGAACAGCAGCACCGATA-GCTACAGCTTCATCAGGGTTAACA 948 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||| | || ||||| || ||||| || |||||||| ||| | ||| || ||| ||| Sbjct 1486 CCGAAAGCCAGAGCAGCAGCAGTAGGCTCATTAATAATTCTCTTAACTTCCAAATTTGCA 1545 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || || ||| ||| ||| |||||||||||||| ||||| || || || || ||||| Sbjct 1546 ATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCATTGAAGTAGGCAGGGACAGTG 1605 Query 86239 ATAACTGCTTTATTAATA 86256 ||||| || | |||||| Sbjct 1606 ATAACAGCCTCTTTAATA 1623 >seq29885 Length=2322 Score = 107 bits (118), Expect = 1e-17 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| || | || | |||||| ||||| || ||||||||||||||| ||| | Sbjct 1477 TTGTCAAGTCCGAAAGCCAGAGCAGCGGCAGTAGGCTCATTAATAATTCTCTTAACTTCC 1536 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | | ||||| |||| ||||| ||||| |||||||| |||| |||||| || || ||| Sbjct 1537 AAATTTGCAATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCGTTGAAGTAGGCA 1596 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTTT 282513 || ||||| || || || ||| | | | | ||||| || ||| || ||| |||| || Sbjct 1597 GGGACAGTGATGACAGCCTCTTTAATATTTCCTCCAAGAT-AGCTCTCTGCAGTTTCCTT 1655 Query 282514 CATTTT 282519 ||| || Sbjct 1656 CATCTT 1661 Score = 93.3 bits (102), Expect = 3e-13 Identities = 268/404 (66%), Gaps = 20/404 (5%) Strand=Plus/Plus Query 281410 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 281469 |||||| || || |||| ||| || | |||||||| ||||| | ||| || ||||| Sbjct 561 TGTTGACTTGTCCTTTGCAGACACGTTCATGATACCATTTGCATCAATATCGAAAGTGAC 620 Query 281470 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGT-TCCCA 281528 ||| ||||| ||| ||||| |||| ||||| ||| |||| || | | ||| | Sbjct 621 TTCGATTTGTGGGTGGCCTCTTGGAGCCATAGGGATACCT-CCAAGTTCGAACTCTCCAA 679 Query 281529 GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAG 281588 || || ||||| || | | || ||||||| ||| | | ||| |||| | Sbjct 680 GAACCTTGTTATCGGCAGCCATCTCTCTCTCACCCTGGAAGACCTTGATGCTAACCTTGG 739 Query 281589 TTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTT 281647 | || || || | | ||||| || || ||| | || || || || || |||||| Sbjct 740 TCTGGTTGTCAGCAGCAGTTGAGAAGAC-CTGACTCTTCTTGGTGGGGATGGTAGTGTTT 798 Query 281648 CTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 281707 || | || | || ||||| | ||| ||| || || | ||| ||||| || || || Sbjct 799 CTTTGGATCAACTTAGTCATCACACCTCCAAGGGTCTCGATACCCAGAGACAGTGGGGTT 858 Query 281708 ACATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 281766 ||||| | || | ||||| ||||| |||| |||| ||| | || | Sbjct 859 ACATCCAAAAGCAAAATATCTTTGAC----TTCACCAGT---------AAGGACTGCACC 905 Query 281767 TTGAATAGCAGCACC-ATATGCAACAGCTTCATCAGGATTAACA 281809 |||| ||||||||| ||| || |||||||||||||| |||||| Sbjct 906 CTGAACAGCAGCACCGATA-GCTACAGCTTCATCAGGGTTAACA 948 >seq13023 Length=2091 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 |||| || || || || || || |||| ||||||||||||||| ||||| || || |||| Sbjct 1383 CTTGTTTCTTGTCTAGTCCGTAGGCAATAGCAGCAGCAGTTGGCTCATTGATTATCCTCA 1442 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 || | || |||||||| ||||||||||| || || || ||||||| |||||| | Sbjct 1443 GTACTTCCAGGCCAGCAATCTGCCCTGCATCTTTCGTTGCCTGCCTTTGTGCATCGTTGA 1502 Query 282447 AATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || || || || |||| Sbjct 1503 AGTAAGCTGGGACTGTGATTACTGCAT 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738547855458468