Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq39418 91.5 1e-13 seq39092 91.5 1e-13 seq8188 86.0 4e-12 >seq39418 Length=937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | || || | ||| || ||| ||| || || ||||| || |||||| Sbjct 523 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 582 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| ||||| | ||| ||||| || || | | ||| ||||| | || Sbjct 583 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 642 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| || | || | |||||| || || || Sbjct 643 ATTCCTTCTTTGTCCTGGATCTTAGCCTTC-ACGTTCTCGATGGTGTCTGATGGCTCGAC 701 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 ||| | ||||| || || ||||| | || || |||||||| ||||| ||||| Sbjct 702 GTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTGG 755 >seq39092 Length=483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | || || | ||| || ||| ||| || || ||||| || |||||| Sbjct 69 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 128 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| ||||| | ||| ||||| || || | | ||| ||||| | || Sbjct 129 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 188 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| || | || | |||||| || || || Sbjct 189 ATTCCTTCTTTGTCCTGGATCTTAGCCTTC-ACGTTCTCGATGGTGTCTGATGGCTCGAC 247 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 ||| | ||||| || || ||||| | || || |||||||| ||||| ||||| Sbjct 248 GTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTGG 301 >seq8188 Length=937 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | || || | ||| || ||| ||| || || ||||| || ||||| Sbjct 415 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAA 356 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| ||||| | ||| ||||| || || | | ||| ||||| | || Sbjct 355 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 296 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| || | || | |||||| || || || Sbjct 295 ATTCCTTCTTTGTCCTGGATCTTAGCCTTC-ACGTTCTCGATGGTGTCAGATGGCTCGAC 237 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 ||| | ||||| || || ||||| | || || |||||||| ||||| ||||| Sbjct 236 GTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTGG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328534070098560