Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25860 179 5e-40 seq3222 138 2e-27 >seq25860 Length=1350 Score = 179 bits (198), Expect = 5e-40 Identities = 391/583 (67%), Gaps = 2/583 (0%) Strand=Plus/Minus Query 39637 GCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTT 39696 ||| || ||||| || || | ||| || || || |||||||||||||| || || | ||| Sbjct 941 GCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTT 882 Query 39697 TTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAA 39755 |||||||| || || | |||| ||| | || ||||||||||| ||||||||||| |||| Sbjct 881 CTTGAGCCAGAAGATCG-AGCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAA 823 Query 39756 ATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || || ||||||||| |||| || | || ||||| | | ||||| |||| Sbjct 822 ACGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTGATCCAACGCAGGGCCCAGTCAG 763 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCAC 39875 | |||||||| || || || | ||| | || || ||||| | | ||| || | Sbjct 762 CCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTTTT 703 Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 || || | || || || |||| ||| || | || || ||||||||||| ||| Sbjct 702 GGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCATCA 643 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 ||||| || ||||| || || | ||||||| | || | ||| | || ||||| Sbjct 642 TCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCTCA 583 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 ||||| || ||| || || || || ||||| || || || | || | || | Sbjct 582 TAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTTGA 523 Query 40056 TAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTA 40115 | || | | | || | | || | | | | ||| || |||| || | | | ||| | Sbjct 522 TGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATCGA 463 Query 40116 CTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGAT 40175 |||||| || ||||| || | || | | ||||||||| ||||| |||||| | Sbjct 462 TTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATCATTGT 403 Query 40176 ATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 40218 | | || || | || ||||||||||| || |||| | |||| Sbjct 402 ACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 138 bits (152), Expect = 2e-27 Identities = 518/803 (65%), Gaps = 12/803 (1%) Strand=Plus/Minus Query 69322 ATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTT 69381 || ||||| || || || || | | || ||||| || | ||||||| || || || Sbjct 1513 ATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTG 1454 Query 69382 TTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATA 69441 |||||| || || ||||| || || | || || || ||||| |||||| || || Sbjct 1453 CGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATG 1394 Query 69442 ATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT---GTAACGCTTCTCTTTTTCA 69498 || || ||| | |||||| |||||| ||||| | | ||| || || ||| Sbjct 1393 ATCCATCCCCAGAGTTACCTAGCTTTTATT---GTCTTTCTGCCTCTCTTATCCTTCTCA 1337 Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 || || ||| ||| || || | || ||||| ||||| | |||||||| ||| Sbjct 1336 TACTGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCA 1277 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 ||||| ||||| | | ||| | |||| ||| || | ||||| || ||||| || Sbjct 1276 TTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGC 1217 Query 69619 ATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677 | ||| | ||| ||| || | |||||| | | | |||||| || || || || || Sbjct 1216 ACCCACAAAGC-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTT 1158 Query 69678 AAGATCGAGAAACTCCATA-ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTC 69736 | | || || || ||| || || | ||||| || || || || | || | | | Sbjct 1157 CAACTGAAGGAAGTC-ATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAAC 1099 Query 69737 CCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCA 69796 || || ||| || || || || | |||||| | || | || ||||||| || || Sbjct 1098 CCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACA 1039 Query 69797 TCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAA 69856 | || | | || ||||| | |||||||||||| ||||||||| | || | | Sbjct 1038 TGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGA 979 Query 69857 TATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 | | || | || || || |||||||| || || || | | ||| | |||| Sbjct 978 TTCTGTGCATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCA 919 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG-AC 69975 || ||| | || || || || |||||| |||||| || || ||||| | || | Sbjct 918 GCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTC 860 Query 69976 ATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT 70035 || ||| ||| ||||| ||||| || | ||||| | || || |||||||| | Sbjct 859 ATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTC 800 Query 70036 TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATC 70095 || | || || |||||||||| ||| | || | ||| ||| ||||| || Sbjct 799 TCTCCCATCAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATA 740 Query 70096 GCGACACGCATCAACATATGCTG 70118 |||||||| ||||| ||||| Sbjct 739 CTCACACGCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686544583781520