Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3222 134 2e-26 >seq3222 Length=1589 Score = 134 bits (148), Expect = 2e-26 Identities = 561/872 (64%), Gaps = 15/872 (2%) Strand=Plus/Minus Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 ||||| ||| |||||||| || || || | ||||| ||||| ||||| | Sbjct 1582 TTGACGAACTGGGGAAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAG 1523 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | ||| ||| |||||| || || || || | | | Sbjct 1522 GTGTACTCGATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAG 1463 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || || || ||| |||||||| |||||||||||||| || || || || || |||| Sbjct 1462 TTGCTTTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGA 1403 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCG--GCTGGTACAATGGCGTTG-GCCCGTCCC 111454 | | || || ||| | | | ||| || || | || ||| || Sbjct 1402 CTCTCAATGAT--CCATCCCCAGAGTTACCTAGCTTTTAT--TGTCTTTCTGCCTCTCTT 1347 Query 111455 -TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 ||| ||| |||| || || ||||||| ||||||| | || |||| || Sbjct 1346 ATCCTTCTCATACTGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCC 1287 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | ||| || | ||||| ||| | ||| | |||| |||| ||||||||| Sbjct 1286 AGGACACTCATTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAA 1227 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| ||||| | ||||| | | || | |||||| || ||||| | || || Sbjct 1226 AAGATCTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTG 1167 Query 111634 GTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692 ||| || | |||| |||||| || ||| || |||||||| |||||||| ||||| | Sbjct 1166 GTTCT-TCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGG 1108 Query 111693 CGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 ||| || ||||||| ||| || |||| | || || | | ||| |||| | | Sbjct 1107 CGAAGGAACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGA 1048 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809 | || | ||| || | | || | || | |||||||| || |||||| | | | Sbjct 1047 CTCGCAACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAG 988 Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 ||||| | || ||| ||||||||||| || || ||| || || | || Sbjct 987 ACGCTCTGATTCTGTGCATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAAC 928 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 | | | | || || || |||| || | ||||| || ||||| || | | ||||| | Sbjct 927 ATTGCTTCAGCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAAC 868 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 | | |||||| || | ||||| ||||||||||| || || ||||| || || ||| Sbjct 867 ACGAGCTCATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGA 808 Query 111990 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 || |||| | |||| || ||||| || || ||| || | || || ||| Sbjct 807 AC-CACCTCTCTCCCATCAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGG 749 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTG 112080 || || || || ||||| ||||||| ||| Sbjct 748 ATTCCAATACTCACACGCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627699001732800