Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3222 140 4e-28 >seq3222 Length=1589 Score = 140 bits (154), Expect = 4e-28 Identities = 397/604 (66%), Gaps = 7/604 (1%) Strand=Plus/Plus Query 104225 CAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTG 104284 ||| ||||||| ||||| ||| || || || ||| || || | || ||| || Sbjct 717 CAGCACATGTTAATGCGTGTGAGTATTGGAATCCATTTAGACGATCTGGAGGCTGCTTTT 776 Query 104285 GAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAA 104343 || ||||| || |||| | |||| ||||| || || ||||| || || ||||| Sbjct 777 GAAACATATGATTTGATGGGAGAGAGGTG-GTTCACACATGCTACACCTACTCTGTTCAA 835 Query 104344 TGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 104403 |||||| ||||| | || || ||| | || ||||| | | || ||||| || || Sbjct 836 TGCTGGAACACCGAATCCTCAGATGAGCTCGTGTTTCCTGCTGGACATGAAGGATGATTC 895 Query 104404 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 104463 ||| | || |||| || || || | | | ||| | || || ||| || || || Sbjct 896 AATTGAAGGAATCTTTGAGACGCTGAAGCAATGTTCCATCATTTCGAAGCATGCAGGAGG 955 Query 104464 TATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGG 104523 ||||||||| ||| || | ||||| | | | |||||| || |||||||| Sbjct 956 TATTGGGATAGCCATGCACAGAATCAGAGCGTCTGATAGTTATATTCGTGGAACAAATGG 1015 Query 104524 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 104583 | || | || | | || ||| | || || | |||| ||| | | || || | Sbjct 1016 ATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAACGATACATCAAGATACGTTGA 1075 Query 104584 TCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGA 104640 |||| ||| | ||||||| || |||| ||||| |||||||| |||||||| || Sbjct 1076 CCAAGGTGGTGGCAAAAGAAAGGGTTCCTTCGCCGTCTACCTTGAGCCCTGGCACGCCGA 1135 Query 104641 TATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCG 104699 ||| || |||||| ||||| ||||| || | || || ||| ||| | | Sbjct 1136 CATCTATGACTTCCTTCAGTTGAAGAAGAACCACGGGAAGGAAGAATAGCG-TGCGAGAG 1194 Query 104700 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 104759 || | |||| ||| | ||| | |||||||| ||||||||||| || |||| |||| Sbjct 1195 ATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAGAGGGTGGAGGTCGATGGCG 1254 Query 104760 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGT 104819 ||||| |||| | || ||| | || ||||| |||| ||| | ||||||| ||| Sbjct 1255 ATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTATGATTCATGGGGTGAGTAGT 1314 Query 104820 TTGA 104823 |||| Sbjct 1315 TTGA 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582951540542320