Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3222 116 4e-21 seq25860 100 3e-16 >seq3222 Length=1589 Score = 116 bits (128), Expect = 4e-21 Identities = 482/750 (64%), Gaps = 18/750 (2%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||||||| || ||||||| || || ||||| || ||||| | ||| | || |||||| Sbjct 1517 CTCGATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCT 1458 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 || |||||| || || |||||| |||||| || || || || || | |||||||| Sbjct 1457 TTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTC 1398 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 | | | |||||| | || || | ||| || || | | | | | Sbjct 1397 AATGATCCATCCCCAGAGTTACCTAGCTTTTATTGTCTTTCTG--CCTCTCTTATCCTTC 1340 Query 79278 G--TACGTCCGGTACAACTCGTTGAAAGCCTC--CCCATAGACATCGGGCAGGCCCGGGC 79333 ||| | |||| || | || ||| ||||| || ||| ||||| || | Sbjct 1339 TCATACTGCTCATACAGCTTCTCAAACTACTCACCCCAT-GA-ATCATAGAGGCCAGGAC 1282 Query 79334 ACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGT 79393 |||| | |||||||| || ||| || | || ||| ||| ||| |||||| || | Sbjct 1281 ACTCATTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGAT 1222 Query 79394 CCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCA 79453 | || | ||||| || ||| | || | |||| || || | || |||||| Sbjct 1221 CTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCT 1162 Query 79454 GACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACG 79513 || || || ||||| ||||||||||||||| ||||| || |||| |||||| | Sbjct 1161 TCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGG 1102 Query 79514 AACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGA 79573 ||||||| | ||||| || || |||| ||||| | | || | |||| | ||||| | Sbjct 1101 AACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCA 1042 Query 79574 GCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCC 79633 ||||||||| | |||| | | || || || || || || | ||| | Sbjct 1041 ACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGACGCTC 982 Query 79634 GAATGTTCGAGCAGTGG--ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTC 79691 || | | ||| ||| || || || || || | ||| || ||| | || | Sbjct 981 TGAT-TCTGTGCA-TGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTG 924 Query 79692 CTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC---A 79748 ||| |||||||| |||| || || || || || |||||||| | | |||||| | | Sbjct 923 CTTCAGCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACACGA 864 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||| |||||| || || || || || ||||| || || || || || || ||||| Sbjct 863 GCT---CATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAA 807 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTC 79838 || | | | ||||| ||| || || || Sbjct 806 CCACCTCTCTCCCATCAAATCATATGTTTC 777 >seq25860 Length=1350 Score = 100 bits (110), Expect = 3e-16 Identities = 323/499 (65%), Gaps = 2/499 (0%) Strand=Plus/Plus Query 59616 TTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAAT 59675 |||||| | | ||| || || || | || ||||| || |||||||| | |||| Sbjct 444 TTCTGGACTGCCGAAGAAATCGATTTGGCTCAGGACCTCAAAGATTGGGAGAGACTCACC 503 Query 59676 TACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 || ||||| || ||||||||| || || ||||||||||| || || || || Sbjct 504 GACAACGAGAGACACTTCATCAAGTACGTGCTAGCCTTCTTCGCCGCATCAGACGGCATC 563 Query 59736 GTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 || | || || | | |||| || | || || ||||| | | || || |||| Sbjct 564 GTTCTTGAGAACTTGGCTATGAGATTCTGCACCGAGATCCAGGTGCCTGAAGCGCGGTGC 623 Query 59796 TTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||||||| | || | | | || |||||||| ||||| ||||| || | ||| Sbjct 624 TTCTACGGCTTCTAGATGATGATGGAAAACATCCACTCTGAGACCTACTCCCTGCTAATC 683 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCC 59915 || | | |||| || | | ||||| | || ||| |||| ||| | | Sbjct 684 GACACCTACATCAACGACCAAAACGAGAAAGACTTCCTCTTCAAAGCCACAGACAACATC 743 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGGAGCATCATT 59974 |||| || || | || || || |||||| ||| ||||| || ||| | | | | Sbjct 744 CCCGTCGTGAAGAAGAAGGCTGACTGGGCCCTGCGTTGGATCAGCTCCGACAATAGC-TA 802 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 ||| | | ||| |||| ||||| || |||||||||||||| || ||| ||||| Sbjct 803 CGCAGAGAGACTCGTAGCGTTTGCGGCAGTAGAAGGAATCTTCTTTTCGGGCAGCTTCTG 862 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 | || ||||||||||| ||| | || || ||||| || || | ||||| || || || Sbjct 863 CTCGATCTTCTGGCTCAAGAAGAGGGGGCTTATGCCTGGACTCACCTTCTCGAATGAACT 922 Query 60095 GATTTCCCGGGACGAGGGC 60113 || | | ||||| ||| Sbjct 923 TATCAGCAGAGACGAAGGC 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548233958437920