Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25860 165 9e-36 seq3222 140 4e-28 >seq25860 Length=1350 Score = 165 bits (182), Expect = 9e-36 Identities = 349/521 (67%), Gaps = 0/521 (0%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||||||| || | ||||||||| || | || ||||||||||| || | ||| Sbjct 941 GCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTT 882 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||| | |||||| || |||||||| ||||| || |||||| Sbjct 881 CTTGAGCCAGAAGATCGAGCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 || || || | | ||| | ||||| | |||||| | | ||||| ||||| Sbjct 821 CGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTGATCCAACGCAGGGCCCAGTCAGC 762 Query 74948 TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGG 75007 || || || | |||| | || | |||| ||||||| | ||||| | | Sbjct 761 CTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTTTTG 702 Query 75008 ATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAA 75067 || |||| | |||| || | || ||||| ||||| || || || || | | Sbjct 701 GTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCATCAT 642 Query 75068 CGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCAT 75127 | || | | ||||||| ||||||| || | | ||| | || | | || |||| Sbjct 641 CATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCTCAT 582 Query 75128 GTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGAT 75187 | | ||||| | ||||||||||| || |||||||| || || || || ||||| Sbjct 581 AGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTTGAT 522 Query 75188 AAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAAT 75247 ||||| | ||| | ||| |||||| | |||||||| || |||||| |||||||| || Sbjct 521 GAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATCGAT 462 Query 75248 CTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 || ||| | |||||||| | ||| | | |||||||| Sbjct 461 TTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACA 421 >seq3222 Length=1589 Score = 140 bits (154), Expect = 4e-28 Identities = 377/564 (67%), Gaps = 22/564 (4%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || || || || ||| | | | || || || || || || || || |||||||| Sbjct 776 TGAAACATATGATTTGATGGGAGAGAGGTGGTTCACACATGCTACACCTACTCTGTTCAA 835 Query 53302 CGCTGGTAC---GAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 ||||| || ||||| |||||||| |||| | |||||| ||| |||||||| Sbjct 836 TGCTGGAACACCGAATC---CTCAGATG---AGCTCGTGTTTCCTGCTGGACATGAAGGA 889 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| || || || || |||| |||||||| ||| | ||| || ||| || ||| | Sbjct 890 TGATTCAATTGAAGGAATCTTTGAGACGCTGAAGCAATGTTCCATCATTTCGAAGCATGC 949 Query 53416 GGGTGGTATCGGTAT--CCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 || ||||| || || ||| ||| | ||| || | ||| | | || || Sbjct 950 AGGAGGTATTGGGATAGCCA-TGCACAGAA--TCAGAGCGTCTGATAGTTATATTCGTGG 1006 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || || || | | | || | ||||| ||| | || |||| |||| | || | | Sbjct 1007 AACAAATGGATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAACGATACATCAAG 1066 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||||| |||| |||||||| || | ||||| || |||||| ||||||| ||||| || Sbjct 1067 ATACGTTGACCAAGGTGGTGGCAAAAGAAAGGGTTCCTTCGCCGTCTACCTTGAGCCCTG 1126 Query 53593 GCACGCCGACAT-TATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 |||||||||||| ||| || || || || || ||| || || | ||||| || Sbjct 1127 GCACGCCGACATCTAT-GACTTCCTTCAGTTGAAGAAGAACCACGGGAAGGAAGAATAGC 1185 Query 53652 GCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 | ||| | || |||| ||| ||||| | || || || |||||| | | ||||||| Sbjct 1186 G-TGCGAGAGATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAGAGGGTGGAG 1244 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTAC 53770 || | || ||| || |||||||| || ||||| || |||||| | | | | Sbjct 1245 GTCGATGGCGATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTATGATTCATGG 1304 Query 53771 GGTGAGGAGTTTAACGAGATGTAT 53794 |||||| ||||| | || ||||| Sbjct 1305 GGTGAGTAGTTTGAGAAGCTGTAT 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546925852396400