Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq38338 84.2 1e-11 seq25823 84.2 1e-11 seq22711 84.2 1e-11 seq4283 84.2 1e-11 >seq38338 Length=449 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || |||||||||||| || |||||||| ||||| || || || Sbjct 295 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 354 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | |||||||||| || || || ||||| || | | |||||| || || || Sbjct 355 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 414 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||||||||| ||||||| Sbjct 415 ATACCCTCCTTGTCCTGGATCTTT 438 >seq25823 Length=903 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || |||||||||||| || |||||||| ||||| || || || Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | |||||||||| || || || ||||| || | | |||||| || || || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||||||||| ||||||| Sbjct 539 ATACCCTCCTTGTCCTGGATCTTT 516 >seq22711 Length=903 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || |||||||||||| || |||||||| ||||| || || || Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | |||||||||| || || || ||||| || | | |||||| || || || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||||||||| ||||||| Sbjct 539 ATACCCTCCTTGTCCTGGATCTTT 516 >seq4283 Length=919 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || |||||||||||| || |||||||| ||||| || || || Sbjct 261 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 320 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | |||||||||| || || || ||||| || | | |||||| || || || Sbjct 321 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 380 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||||||||| ||||||| Sbjct 381 ATACCCTCCTTGTCCTGGATCTTT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314566894435394