Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25823 105 5e-18 seq22711 105 5e-18 seq4283 105 5e-18 seq36835 96.9 2e-15 seq16860 96.9 2e-15 seq26408 87.8 1e-12 >seq25823 Length=903 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| | | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| || ||| | || || |||||| Sbjct 493 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||||| | || || || |||||| Sbjct 553 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||||| || | ||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq22711 Length=903 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| | | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||| || ||||| || ||| | || || |||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||||| | || || || |||||| Sbjct 553 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||||| || | ||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq4283 Length=919 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| | | Sbjct 487 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 428 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| || ||| | || || |||||| Sbjct 427 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 368 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||||| | || || || |||||| Sbjct 367 CAGAGACTCATCTTTGCAGGAAAGCAGCTTGAAGACGGCAGGACCTTGTCTGACTACAAC 308 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||||| || | ||| || |||| ||| Sbjct 307 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 260 >seq36835 Length=903 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| | | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||| || ||||| || ||| | || || |||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || || || | | || || || |||||| Sbjct 553 CAGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAAC 612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||||| || | ||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq16860 Length=798 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| | | Sbjct 433 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCC 492 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||| || ||||| || ||| | || || |||||| Sbjct 493 GACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 552 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || || || | | || || || |||||| Sbjct 553 CAGAGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAAC 612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||||| || | ||| || |||| ||| Sbjct 613 ATCCAAAAGGAATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 660 >seq26408 Length=477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || ||||| || ||||| || ||||||||||| ||||| | | ||||| ||| Sbjct 1 TCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGATGTTGAGCCTTCCGACACCATTG 60 Query 23681 AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 ||| | || ||| || ||||| || ||| | || || ||||||||| | | | Sbjct 61 AAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAACAGAGACTCA 120 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | ||||| || || || || || || | | || || || |||||||| ||||| | Sbjct 121 TCTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACCTTGTCTGACTACAACATCCAAAAGG 180 Query 23801 AGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || | ||||| || | ||| || |||| ||| Sbjct 181 AATCAACCCTCCATTTGGTGCTGAGGCTGAGAGGTGGA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337834859388344