Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq25860 203 4e-47 seq3222 140 5e-28 >seq25860 Length=1350 Score = 203 bits (224), Expect = 4e-47 Identities = 401/591 (68%), Gaps = 2/591 (0%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 ||||| ||||| || || | ||| || || || ||||| || ||||| || || | || Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 |||||||| || || | || ||| | || |||||||| || |||||||| |||||||| Sbjct 880 TTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 || ||||||||| |||| || ||| | ||||| || | ||||| ||||| Sbjct 821 CGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTGATCCAACGCAGGGCCCAGTCAGC 762 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT 48400 ||||||||| || || || | ||| | || || ||||| |||| ||| || || Sbjct 761 CTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTTTTG 702 Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 || || | ||| || || |||| || || | || ||||| || ||||| || Sbjct 701 GTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCATCAT 642 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 ||||| || ||||| || || | |||||| | | ||| | ||| || || |||| Sbjct 641 CATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCTCAT 582 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 |||||| |||||| || || || || || || || || |||| || | || || Sbjct 581 AGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTTGAT 522 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 || | | | |||||| || ||| | | ||| || |||| || | | | ||| | Sbjct 521 GAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATCGAT 462 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTA 48700 |||||| || ||||| || |||| | | ||| ||||| ||||| |||||| |||| Sbjct 461 TTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATCATTGTA 402 Query 48701 TTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTC 48751 | || || | || ||||||||||| || |||| | |||| | ||| || Sbjct 401 CTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAGAAGAGGCTC 351 >seq3222 Length=1589 Score = 140 bits (154), Expect = 5e-28 Identities = 544/850 (64%), Gaps = 4/850 (0%) Strand=Plus/Minus Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCG 77738 || || || || || || || || || || |||| || || || | || ||||| Sbjct 1564 GCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTCA 1505 Query 77739 GTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCAT 77798 || || || || | | || |||||||| | ||||| | |||||| || || || Sbjct 1504 GTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACAC 1445 Query 77799 GAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTC 77858 | || || || || || | || || || ||||| ||||| || || || || | Sbjct 1444 GCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCCC 1385 Query 77859 CAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATAT 77918 |||| ||||||||||| | | || || | | || | ||||| || ||| Sbjct 1384 CAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATACTGCTCATAC 1325 Query 77919 AGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATC 77978 ||| ||||| | || ||||| ||||| | ||||| || |||||||||||||| Sbjct 1324 AGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACATA 1265 Query 77979 AATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 78038 | | ||| || ||||| ||| || | ||||| || ||||| || | ||| | |||| Sbjct 1264 AGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAGCA 1205 Query 78039 ATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAAC 78098 || | ||||| | | | |||||| || || ||||| || | | || || Sbjct 1204 TAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGGAAG 1145 Query 78099 TCCATA-ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157 | |||| || || | ||||| || || || || | || | || || ||| Sbjct 1144 T-CATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTTGCC 1086 Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || || || | ||||| | || | || || |||| |||||| || | | || Sbjct 1085 ACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAACCC 1026 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||| ||||||||||||| ||||||||| || || | || | |||| Sbjct 1025 GTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCATGGC 966 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 |||||| || |||||||| ||| || || | | || | |||| || || |||| Sbjct 965 TATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAAAGAT 906 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATGATGAA 78396 || || || |||||| |||||| || || ||||| | || ||| ||| ||| Sbjct 905 TCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGATTCG 847 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||| ||||| || | || || | ||||| || ||||| | || | | || Sbjct 846 GTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATCAAAT 787 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||||| ||| | || | || | ||| ||||| | |||||||| | Sbjct 786 CATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACTCACACGCATTA 727 Query 78517 ACATATGCTG 78526 |||| ||||| Sbjct 726 ACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694300469235520