Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3222 192 8e-44 seq25860 163 4e-35 >seq3222 Length=1589 Score = 192 bits (212), Expect = 8e-44 Identities = 570/871 (65%), Gaps = 6/871 (1%) Strand=Plus/Minus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 ||| || || || || || || || || || || |||| ||| || || | || || Sbjct 1568 AAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGAT 1509 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 ||| ||||| || || | |||| ||||| || | ||||| | |||||| || ||| Sbjct 1508 CTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTT 1449 Query 76390 ACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 ||| | || || || || | | || || || ||||| ||||| || || || | Sbjct 1448 ACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCA 1389 Query 76450 TTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGT 76509 | ||||| |||||||||||| | | || || ||| || | ||||| || Sbjct 1388 TCCCCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATACTGCTC 1329 Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||| | | ||||| | || ||||| ||||| | |||||||| ||||| || || Sbjct 1328 ATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCA 1269 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| | | ||| || ||||| ||| |||| ||||| || ||||| || | ||| | Sbjct 1268 CATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAA 1209 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 |||| || | ||||| | | |||||| || || ||||| || | | || Sbjct 1208 AGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAG 1149 Query 76690 GAACTCCATA-ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTT 76748 ||| | |||| || || | ||||| || || || || | || | |||| || || Sbjct 1148 GAAGT-CATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTT 1090 Query 76749 TATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAA 76808 | ||| || || || | ||||| | || | || || |||| |||||| || | | Sbjct 1089 TGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTA 1030 Query 76809 TGCCGTTAGATGTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 |||||||| ||| |||||||||||| ||||||||| || | || | || | Sbjct 1029 ACCCGTTAGA-GTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGC 971 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 || | || || || |||||||| || || || | | ||| | |||| || ||| Sbjct 970 ATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCA 911 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATG 76986 |||| || || || ||||||| |||||| || || ||||| | || ||| ||| | Sbjct 910 AAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGG 852 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG 77046 || ||||| ||||| |||| ||||| | ||||| |||||||| | || | Sbjct 851 ATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCAT 792 Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 | || |||||||||| | | || || | ||| | ||| ||||| | | ||||| Sbjct 791 CAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACTCACACG 732 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTC 77137 ||| ||||| ||||| | || || ||| || Sbjct 731 CATTAACATGTGCTGCAGACGCTCGACAATC 701 >seq25860 Length=1350 Score = 163 bits (180), Expect = 4e-35 Identities = 393/592 (66%), Gaps = 2/592 (0%) Strand=Plus/Minus Query 46650 GCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTT 46709 |||||| ||||| || || | ||| || || || ||||| |||||||| || || | ||| Sbjct 941 GCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTT 882 Query 46710 TTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGA 46768 |||||||| || || | || ||| | || |||||||| || |||||||| ||||| | Sbjct 881 CTTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAA 823 Query 46769 ATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAG 46828 | || || ||||||||| |||| || || ||||| | | ||||| |||| Sbjct 822 ACGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTGATCCAACGCAGGGCCCAGTCAG 763 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCAC 46888 |||| ||||| || || || | ||| | || || ||||| |||| ||| || | Sbjct 762 CCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTTTT 703 Query 46889 TATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAG 46948 || || | || || || |||| || || | || || || |||||||| || Sbjct 702 GGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCATCA 643 Query 46949 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTT 47008 ||||| || ||||| || || | ||||||| | ||| | ||| || || |||| Sbjct 642 TCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCTCA 583 Query 47009 CAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 || ||| |||||| || || || || || || || || || | || | || | Sbjct 582 TAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTTGA 523 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 47128 | || | | | || | | || ||| | | ||| || |||| || | | | ||| | Sbjct 522 TGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATCGA 463 Query 47129 CTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGAT 47188 |||||| || |||||||| | || | | ||| ||||| ||||| |||||| | Sbjct 462 TTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATCATTGT 403 Query 47189 ATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 | | || || | || ||||||||||| || |||| | |||| | ||| || Sbjct 402 ACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAGAAGAGGCTC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712556384357760