Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq23919 86.0 2e-12 >seq23919 Length=1798 Score = 86.0 bits (94), Expect = 2e-12 Identities = 201/299 (67%), Gaps = 11/299 (4%) Strand=Plus/Plus Query 52081 CTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCC 52140 |||| |||||||||| ||| | | |||||| | |||||||||||| || | Sbjct 1284 CTGCGTGGAATGTGGCTGACCTCAGCAAGATGGCGCTCCCTCCCTGCCATATCTTAGCAC 1343 Query 52141 AATTCTATGTAGCTGAAGGTAAG---CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACA 52197 | ||||| || ||| || |||| || || ||||| ||||| | |||| ||||| Sbjct 1344 AGTTCTACGTCTCTGCAGATAAGGCTCTCTCCTGCCAAATGTATTAAAGGTCCTGCGACA 1403 Query 52198 TGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGAC--GCATCTGATTGC 52255 || | || ||||| || |||||||| |||||| |||||||||| ||| || |||| Sbjct 1404 TGGGACTTGGTGTTCCTTTCAACATTGCTAGCTATGCCTTGCTGACATGCA--TGCTTGC 1461 Query 52256 TCGAGCAGTTGGCCTTGATGTTGGTGAATTCATTTGGACTG--GTGGCGACGTCCATATC 52313 | || | | ||| | |||||| ||| || |||| || |||| ||| || Sbjct 1462 ACAAGTATGCGACCTGAAACGTGGTGAGTTC--GTGCACTGCCTAGGTGACGCCCACGTC 1519 Query 52314 TACAACAACCATGTAGATCAGGTTAGGGAACAGTGTAGTCGCGTGCCATATCCGTTCCC 52372 ||| |||||| |||| | ||| ||| ||| || ||| || || || ||||| Sbjct 1520 TACTCCAACCACATAGAGCCCCTTAAGGAGCAGCTTAAGCGCTACCCTTACCCATTCCC 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190000246030980