Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12968 145 8e-30 >seq12968 Length=2778 Score = 145 bits (160), Expect = 8e-30 Identities = 401/606 (66%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 16942 TTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGAT 17001 |||||| |||||| | | | |||||| ||||| || | || || |||||||| || Sbjct 427 TTTAAG-TGTTTATAGAGTAAACATGCAAAATCAGTGTGCATGCCTTCATCTCTGCTTAT 485 Query 17002 AAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGC 17061 ||||| ||| ||||||| || ||||| ||| || ||||| | ||| || || || Sbjct 486 GAGTTCATTACTGAATGTCAGACCAGGCATTAATCCGCGCTTCTTCATCCAGAAGATAGC 545 Query 17062 GGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGC 17121 ||| || || || || || ||||| || | | || || || | ||||| |||||| Sbjct 546 ACAGAATGAGCCTGAGAAAAAGATACCTTCAATAGCAGCGAATGCTACTAATCTTTCGGC 605 Query 17122 GTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 || | ||| | | |||||||| |||| ||||| |||| || ||| Sbjct 606 ATAGGAATTATCTGAG---CCTATCCATTTTAAGGCCCATTCGGCCTTTT----TA-GCA 657 Query 17182 AT--CC--ATCGTTTCT-ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATA 17236 | || | |||| | || || ||||| | ||||| || | | | || | || Sbjct 658 ACAACCGGAATGTTTGTGATTGCTTTAAAAAGGAAGTCTTTATCTTATGGATCAGTGATG 717 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || ||||| ||||| || ||| | || ||||| ||||||||||| || | |||| Sbjct 718 TAGGTATCAATGAGAAGAGAGTAGGTCTCTGAGTGAATGTTCTCCATCATCATTTAAAAT 777 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 ||||||||||||| || || | |||| | ||| | |||| | || || | ||| Sbjct 778 CCGTAAAAGCATCTAGCCTCAGGAATTTAGATTTCAGTGCAGAACCTTTAAGCCAAATTC 837 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416 || || || || || || || |||||||| || | | ||||||||| || | |||| Sbjct 838 TCAAGAACTATTCCATCACTAGCAGCGAAAAAGGCAAGAACATGCTTAATAAAGTGTTTT 897 Query 17417 TCGTC--CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 || | || || || |||||| || | ||| | | || || | ||| || | Sbjct 898 TCACCATCGTTG--AGTTTTTCCCAGTCTTTAACATCAGTAGCTAAGTCTATTTCCTCAG 955 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGG 17534 ||||| || | ||||| | | ||| ||||| ||||| |||||||||||| |||| Sbjct 956 CAGTCCAGAAGCAAGCCATTTAATCTTTGTACATCTTCCATATATCATTGTATCTGATGG 1015 Query 17535 GGAATA 17540 | |||| Sbjct 1016 GTAATA 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517414635085920