Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3539 138 8e-28 >seq3539 Length=1811 Score = 138 bits (152), Expect = 8e-28 Identities = 351/523 (67%), Gaps = 21/523 (4%) Strand=Plus/Minus Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 ||| | ||| |||||||| | |||||| ||| || || ||||||||||| | ||||| Sbjct 1474 AGCCAGCATACAAGTTAACAAAGAATAAGAAGCTATATTGAATGGCACTCCAAGACCCAT 1415 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCAC---AGACATAAAATTG 101877 |||| || |||||||||| |||||| || ||||| || | ||||| ||||| Sbjct 1414 ATCACAAGACCTTTGATACATTTGACATGATAGCTTATTGTCTGCTGACACATAGAATTG 1355 Query 101878 ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 | |||||| || || || | ||||||| | ||| |||||| || | Sbjct 1354 TGCAAGTACATGGCAGGGTGGAAGAGCCATTTTCTTCAGATCTTTTGGATTCCATGCGCT 1295 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTA-TCAATCAACTGTTTTAATT 101996 ||||| || ||||| | | |||| ||||||| || | |||| || || ||||| Sbjct 1294 CATTATAATTCTTCTTGAT-TCTGGTTGGTTTTTAATCTAATTTATCACCTATTCTAATT 1236 Query 101997 GGTCAACTCCTTCTC-CT-TTATAATCGCGCCCAA-----CA--CCT----TTATATTCT 102043 || || || | | || ||||| | | | || || | | ||||||||| Sbjct 1235 AATCGACGCCCCCACGCTCTTATA-TATCTTCAAATGAATCATGCATAGTATTATATTCT 1177 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || || || || ||||| || || ||||| || || || | || | ||| ||||| || Sbjct 1176 GCGCCAAAGTGTCTCCATTGGAAGCCATATACTGGGCCTAAGTCCCATTCTTCTCTTTCG 1117 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCA-CGCC 102162 | ||| ||| ||||| ||| | |||||| | ||| |||||||||| | | | Sbjct 1116 GTGAGACCGAGTGAATCTAGAAAGGCTCTAGAAGCGTTCCCATCCCAAATTCTAATCTTC 1057 Query 102163 AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAAC 102222 | |||||| | |||| | ||| ||| | || ||||| || ||||| ||| | Sbjct 1056 TTAT-CTGATAAATGTTTGGCATTAGTGTCACCTTTCATGAACCAGAAAAGTTCCTCAGC 998 Query 102223 AACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 |||||| ||||||||||| |||||| |||| |||||| ||| Sbjct 997 AACACCCCTCCAAAATACATCCTTAGTTGTTAGAAGTGGGAAT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361162070749244