Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13015 199 5e-46 seq12968 185 1e-41 >seq13015 Length=2880 Score = 199 bits (220), Expect = 5e-46 Identities = 763/1183 (64%), Gaps = 20/1183 (2%) Strand=Plus/Minus Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||||||| || || |||||||| || | ||| ||||| ||||||| | | Sbjct 1891 ATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCA-A 1833 Query 53509 ATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 |||| || | || || | || |||| ||| | |||||| ||||| |||||||| || | Sbjct 1832 ATTTCAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGAC 1773 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 |||||| |||| |||||| | || || | || | ||| || || || || | Sbjct 1772 GGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTA 1713 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA---- 53683 || | ||||| ||| || | ||| | | ||||||| ||| | Sbjct 1712 AATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAG-GTCTACGAT 1654 Query 53684 TCTAT-TACAAACATGTTCAATGCAATA--GATGCCAGATTACAAACGGCTACCTCATTA 53740 ||| | | || | || | | | ||| || || ||||||||||| || | |||| Sbjct 1653 TCTTTGTTCACATATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATCT 1594 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | |||| | ||| ||| |||||| || | || || || ||||||| Sbjct 1593 GGGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAATGC 1534 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 | || || ||||| || |||||||| ||||| || ||| |||| || |||||||| Sbjct 1533 TATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCT 1474 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 || ||||| ||||| |||| ||| | | || |||| ||| ||| | | | Sbjct 1473 TGTTGAGATTCAATAATAGCTTCCCAAA-GTTTTTAGGCTTTG--ATAACTTTTTTGCCC 1417 Query 53921 TTTTCT-CTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 || || ||||| ||| | | ||| | |||||| || ||||| |||||| | Sbjct 1416 TTGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGT 1357 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 || || || |||| ||||| | | | ||| ||||| | | |||||||| ||| Sbjct 1356 AAGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTC 1297 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 ||||| ||||| || | ||| | ||| ||| |||||||| | ||| | |||||| || Sbjct 1296 ATAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTA 1237 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || ||||| || | || || | | || ||||| |||||| ||||| | || Sbjct 1236 CCGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAA 1177 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | || || ||| || || || || | |||||||| || | ||| Sbjct 1176 ATGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTG 1117 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 |||| | ||||||||||| | ||||| || ||||| || || ||||| Sbjct 1116 AAAACCTTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAAGAG 1057 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || || | ||| | |||||| || || || || || || ||||| ||||| Sbjct 1056 CCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAA 997 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || | || | | ||||| ||||| || | ||| ||| || |||| | | || Sbjct 996 GCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGG 937 Query 54398 AAACAGCTAGACATTTGGTGAC--GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||||| |||||||| || | | | || || | || ||||| ||||||| || | Sbjct 936 AAACATGAAGACATTTA-TGGCTTGGGT-GTACCAGAGTTGAATAAAGTAGGAGTGGCAT 879 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | ||||||||||| || || | || || || || || |||||| | || ||| || Sbjct 878 GAGTAAACCATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTT 819 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || ||||||| | || | ||| ||||| | ||||||| ||||||||| || | Sbjct 818 TGTGGATTCCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCAT 759 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 | ||| || || ||||| || || || |||||||| ||||| Sbjct 758 GAACTTTGAGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 53127 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 53186 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 53187 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 53246 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 53247 TCGGCATAGGTGCCAC 53262 | |||||||| || || Sbjct 2096 TTGGCATAGGAGCAAC 2081 >seq12968 Length=2778 Score = 185 bits (204), Expect = 1e-41 Identities = 592/898 (66%), Gaps = 24/898 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||| ||||| || || | || || || || || || || ||| || ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA-TCCCAATTCAGAAAT 23962 ||||| | || ||||||| ||||| ||| | ||| | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAG-TACTTAGGTACTCCTAAAGCAAAGAG 275 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | |||||| || ||||| | |||||| ||| | | | ||||||| || ||||| Sbjct 276 TAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAG 335 Query 24023 TTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || |||||| ||||| || | | ||| ||| |||||| | || || | || |||| Sbjct 336 TTCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAA 394 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGAT-ACAAT--AAATGTTTAAACATCAAACATG 24138 | || | | | |||| | | | | | || || |||||| | | ||||||| Sbjct 395 TC--TCCAAAATTCT-TTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATG 451 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 | ||||| ||| | || || ||||| || || | ||| || || || || || | Sbjct 452 CAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAG 511 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 24257 |||||| || ||||| || | ||| || || | | || ||||| || || || || || Sbjct 512 GCATTAATCCGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAGAAAAAGATA 570 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG----TAT 24313 ||||| | || || || || | | |||||| |||| || | || || ||| Sbjct 571 CCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTAT 626 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT-ATAGCATTAA 24372 ||| ||| ||||| |||||||| || ||| || || || | | || || |||| Sbjct 627 CCATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAA 685 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | || ||| ||| || | ||| | | || |||||||| | |||| || | | Sbjct 686 AAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCT 745 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | || |||||||| || || ||||| ||||||||| || ||||||||||| | ||| | Sbjct 746 CTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTT 805 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | ||| | || || | || || ||||| ||| |||||||| ||||| || || | Sbjct 806 AGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGA 865 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCA 24611 |||| || | ||||| || ||||| | |||||| | | || | ||||| | ||| || Sbjct 866 AAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT-TGAGTTTTTCCCAGTCT 924 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 || | ||| ||| || || | ||| || | ||||| || | ||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||||| ||||| || |||| ||| || || || || ||||| | || ||||||| Sbjct 985 TACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593571358749120