Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3091 98.7 8e-16 seq3090 98.7 8e-16 seq3089 98.7 8e-16 seq13726 96.9 3e-15 >seq3091 Length=1223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| || || ||||| || || |||||| || Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || || |||||| | ||| |||||| Sbjct 670 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 729 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || || || || |||||| | |||||| | |||| | || |||||| Sbjct 730 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 789 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| |||||||| || |||| | |||| |||| || Sbjct 790 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| || ||||| ||||| ||||| ||| || || || | Sbjct 837 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 896 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| || ||| ||||| || ||| | || ||||| Sbjct 897 TGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCA 956 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||| | ||||| || || || |||||||||||| | |||| | |||| || || Sbjct 957 ATAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATAA 1016 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || ||||| || ||||| | || || |||| || Sbjct 1017 CATCCAAAAGGAGTCAACTCTCCATTTGGTGCTCAGACTAAGAGGTGG 1064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 247 GACAAGGAAGGTATCCCTCCCGATCAACAAAGACTCATCTTCGCTGGCAAGCAATTGGAA 306 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| | |||||||||| || | ||||| |||||||| || | || || Sbjct 307 GATGGCAGAACCCTCTCCGATTACAACATCTAGAAGGAGTCTACTCTCCATCTAGTTTTG 366 Query 25248 CGATTACGAGGAGG 25261 || | ||||||| Sbjct 367 AGACTTAGAGGAGG 380 >seq3090 Length=995 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| || || ||||| || || |||||| || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || || |||||| | ||| |||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || || || || |||||| | |||||| | |||| | || |||||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| |||||||| || |||| | |||| |||| || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| || ||||| ||||| ||||| ||| || || || | Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 668 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| || ||| ||||| || ||| | || ||||| Sbjct 669 TGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCA 728 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||| | ||||| || || || |||||||||||| | |||| | |||| || || Sbjct 729 ATAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATAA 788 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || ||||| || ||||| | || || |||| || Sbjct 789 CATCCAAAAGGAGTCAACTCTCCATTTGGTGCTCAGACTAAGAGGTGG 836 >seq3089 Length=958 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| || || ||||| || || |||||| || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || || |||||| | ||| |||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || || || || |||||| | |||||| | |||| | || |||||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| |||||||| || |||| | |||| |||| || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| || ||||| ||||| ||||| ||| || || || | Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 668 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| || ||| ||||| || ||| | || ||||| Sbjct 669 TGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCA 728 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||| | ||||| || || |||||| | |||||| | ||| | | || || || Sbjct 729 ATAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGAACATTATCTGACTATAA 788 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || | || | || ||| |||| ||||||| Sbjct 789 CATTCAAAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 836 >seq13726 Length=454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||| ||||| | |||||||| || ||| ||||||||||| | |||| | | ||||| Sbjct 1 TCAATAAAGATTGATCTTTGCTGGTAAATAATTGGAAGATGGAAGAACTTTATCTGATTA 60 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| |||||||||| ||||||||| |||| || ||||| |||| || Sbjct 61 CAATATCTAAAAGGAATCAACTCTTCACTTGGTTTTGAGATTAAGAGGTGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410695446673016