Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3091 113 5e-20 seq3090 102 8e-17 seq3089 102 8e-17 seq3088 96.9 4e-15 seq11541 95.1 1e-14 >seq3091 Length=1223 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| |||| ||||| || || ||||| ||||| |||||||| ||||||| ||| | | Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAACCATCA 441 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | || || || |||||||| | || || Sbjct 442 GACACTATTGAGAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCA 500 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| || || ||||| || || || | | ||| | | ||||||||| Sbjct 501 ACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAA 560 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| | || || || |||||||| Sbjct 561 CATCTAGAAGGAGTCAACCCTCCACTTAGTGTTG 594 >seq3090 Length=995 Score = 102 bits (112), Expect = 8e-17 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||| | || ||||| || || | || || || ||||| || | ||||| || || Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGA-GC 208 Query 40746 CACC-GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || | |||| | | | |||| |||||| || || | ||||| || |||||||| | Sbjct 209 CATCAGACACCATTGAGAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCC 267 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || ||| ||||||||| || || ||||| || || || | | ||| | | |||| Sbjct 268 GATCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGAC 327 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||| |||||||| | || || || |||||||| Sbjct 328 TACAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTG 366 >seq3089 Length=958 Score = 102 bits (112), Expect = 8e-17 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||| | || ||||| || || | || || || ||||| || | ||||| || || Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGA-GC 208 Query 40746 CACC-GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || | |||| | | | |||| |||||| || || | ||||| || |||||||| | Sbjct 209 CATCAGACACCATTGAGAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCC 267 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || ||| ||||||||| || || ||||| || || || | | ||| | | |||| Sbjct 268 GATCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGAC 327 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||| |||||||| | || || || |||||||| Sbjct 328 TACAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTG 366 >seq3088 Length=519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||| |||| ||||| ||||| ||||| |||||||| |||||| | || || || | Sbjct 152 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 211 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | || | | | ||||| | || | || ||| ||||||||||||||||| | | Sbjct 212 CTCAGATACAATTGAAAACG-TGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCG 270 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || || || | |||| || || ||| |||| || || | | || | |||| Sbjct 271 ATCAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACT 330 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||| |||||||| | || ||||| |||| || | ||||| || || Sbjct 331 ATAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 382 >seq11541 Length=746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||| |||| ||||| ||||| ||||| |||||||| |||||| | || || || | Sbjct 151 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 210 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | || | | | ||||| |||| | || ||| ||||| ||||||||||| | | Sbjct 211 CTCAGATACAATTGAAAACG-TCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCG 269 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGA 40862 | || | ||||||| | ||| || |||||||| || || | || || ||| || Sbjct 270 ATCAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCA--GA 327 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| | || || | || | || |||| ||| | || || || || Sbjct 328 CTACAACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515088823781440