Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11541 136 3e-27 seq3091 105 6e-18 seq3090 105 6e-18 seq3089 105 6e-18 >seq11541 Length=746 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | ||||||||| || ||||| | |||||| ||||||| |||||||| || Sbjct 383 TACCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTC-- 326 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | ||| || | | ||| || ||||||||||||||| | ||||| | || |||||||| Sbjct 325 TGATAATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGG 266 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || |||||||||||||| ||| || ||| || | ||| | || || | | ||| Sbjct 265 TGGGATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTC 206 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | |||||||| || || ||||| || ||||| | ||| Sbjct 205 AACATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACAT 155 >seq3091 Length=1223 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| | ||||| |||| |||||||| ||||| || ||||| || || | ||| | Sbjct 827 AATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTT 768 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| ||||| |||||||||||| | ||||| | || |||||||| || || || ||| Sbjct 767 CCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCC 708 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 ||||| || || || || | ||||| |||||| | | || || || | || Sbjct 707 TTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 648 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || |||| |||||| || || || ||||| Sbjct 647 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | |||||| || | |||| |||||||| || | |||||||||||| Sbjct 382 TACCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGG 323 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || | || || |||||| ||||||| | || |||||||||| Sbjct 322 AGAGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAG 263 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| || || || || | || | |||||| | ||| | Sbjct 262 GGATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTA 203 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | || || ||||| | || || || ||||||| |||| Sbjct 202 CGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATG 153 >seq3090 Length=995 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| | ||||| |||| |||||||| ||||| || ||||| || || | ||| | Sbjct 599 AATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTT 540 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| ||||| |||||||||||| | ||||| | || |||||||| || || || ||| Sbjct 539 CCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCC 480 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 ||||| || || || || | ||||| |||||| | | || || || | || Sbjct 479 TTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 420 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || |||| |||||| || || || ||||| Sbjct 419 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| | ||||| |||| |||||||| ||||| || ||||| || || | ||| | Sbjct 599 AATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTT 540 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| ||||| |||||||||||| | ||||| | || |||||||| || || || ||| Sbjct 539 CCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCC 480 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 ||||| || || || || | ||||| |||||| | | || || || | || Sbjct 479 TTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 420 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || |||| |||||| || || || ||||| Sbjct 419 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433723363736848