Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11541 93.3 5e-14 seq13099 91.5 2e-13 seq7039 91.5 2e-13 seq3091 82.4 9e-11 seq3090 82.4 9e-11 seq3089 82.4 9e-11 >seq11541 Length=746 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | ||| || || || ||||| || |||| || ||||| || | Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||||||| || |||||||||||||||| || || |||| || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||||| || || ||||| | | | || || | || ||| Sbjct 261 ATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAACA 202 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | ||||| |||||||| || || || || || || |||| ||||||| Sbjct 201 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTTT 151 >seq13099 Length=503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 115 AAAAAAAATCTCCTTGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 174 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| | |||||| Sbjct 175 TTACCACTATACTATCAAGGATT 197 >seq7039 Length=7881 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||| | | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 97 TCTCCTTGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 156 Query 60125 ATACTACCGAGGATT 60139 |||||| | |||||| Sbjct 157 ATACTATCAAGGATT 171 >seq3091 Length=1223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || | | |||||||| | || ||||||||| |||||||| ||| Sbjct 837 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 778 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || || || || |||||||| ||||||| || || |||| || Sbjct 777 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 718 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| | | | ||||| | ||| || Sbjct 717 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 658 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | |||||||| || || || | || || || ||||||||||| Sbjct 657 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || | | |||||||| | || ||||||||| |||||||| ||| Sbjct 609 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 550 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || || || || |||||||| ||||||| || || |||| || Sbjct 549 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 490 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| | | | ||||| | ||| || Sbjct 489 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 430 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | |||||||| || || || | || || || ||||||||||| Sbjct 429 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || | | |||||||| | || ||||||||| |||||||| ||| Sbjct 609 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 550 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || || || || |||||||| ||||||| || || |||| || Sbjct 549 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 490 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| | | | ||||| | ||| || Sbjct 489 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 430 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | |||||||| || || || | || || || ||||||||||| Sbjct 429 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571672901556320