Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3091 104 3e-17 seq3090 96.9 5e-15 seq3089 96.9 5e-15 seq14708 93.3 6e-14 seq10904 86.0 9e-12 seq3925 86.0 9e-12 >seq3091 Length=1223 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || || | ||| | |||||| || || | || || ||||| || Sbjct 380 CCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAG 321 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || ||||| || ||||| || || | |||||| ||||| ||||| Sbjct 320 AGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGG 261 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 260 ATACCTTCCTTGTCTTG 244 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| | |||||||| | |||||| || || ||||| || || Sbjct 838 TTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCAC 779 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||| | ||| || | |||||||||||| ||||| | |||||| ||||| || | Sbjct 778 TTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGG 719 Query 146169 GAATTCCTTCTTTATC 146184 |||| ||||| || || Sbjct 718 GAATACCTTCCTTGTC 703 >seq3090 Length=995 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| | |||||||| | |||||| || || ||||| || || Sbjct 610 TTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCAC 551 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||| | ||| || | |||||||||||| ||||| | |||||| ||||| || | Sbjct 550 TTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGG 491 Query 146169 GAATTCCTTCTTTATC 146184 |||| ||||| || || Sbjct 490 GAATACCTTCCTTGTC 475 >seq3089 Length=958 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| | |||||||| | |||||| || || ||||| || || Sbjct 610 TTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCAC 551 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||| | ||| || | |||||||||||| ||||| | |||||| ||||| || | Sbjct 550 TTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGG 491 Query 146169 GAATTCCTTCTTTATC 146184 |||| ||||| || || Sbjct 490 GAATACCTTCCTTGTC 475 >seq14708 Length=579 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || || || ||||| ||||||||||| | || || || ||||| Sbjct 231 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 172 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||| ||||| ||||| || || | ||| | ||||| || ||| Sbjct 171 AATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTGGA 112 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 111 ATACCTTCTTTGTC 98 >seq10904 Length=2968 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| ||||| || || |||||||||||||||||||| || ||||| |||| Sbjct 679 TCCTCCTCTTAGTCTCAACACTAAATGTAAAGTAGATTCTTTTTGGATTTTATATTCTGC 738 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTT 146156 ||||| | | || || | |||||| || |||||||| ||||||| Sbjct 739 CAGAGTATTTCCATTTTCAAGTTGTTTGCCTGCAAAAATTAATCTTT 785 >seq3925 Length=2882 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| | |||||| || ||||| | ||| ||| || ||||||||||||| || Sbjct 618 TCCACCTCTTAATCTTAAAACTAAATGCAGTGTACTTTCATTTTATATATTATAATCAGA 677 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | || | | |||||||||| || | ||||| | ||| ||||| Sbjct 678 GAGAGTTATATGACTTTCAAGCTACGTTCCAGCAAATATTATTCTTTATTAATCTGGAGG 737 Query 146170 AATTCCTTCTTTATCTT 146186 ||||| |||||||||| Sbjct 738 TATTCCCTCTTTATCTT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743338250644480