Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12968 255 5e-63 seq1030 84.2 2e-11 >seq12968 Length=2778 Score = 255 bits (282), Expect = 5e-63 Identities = 576/863 (67%), Gaps = 21/863 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||| |||||| | |||||||| |||||||| ||||| || ||| || |||||| || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA----TAGTATTTATCGCATCCCAATTCCAA 16059 ||||| | ||||| |||||| |||| ||||| ||| ||| || | || Sbjct 217 TCCATCCACTCAAATGGATTT----AACACATTGTAGTACTTAGGTACTCCTAAAGCAAA 272 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 | || |||||| |||||||||| |||||| || |||||| | | | ||||| || || Sbjct 273 GAGTAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAAT 332 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | || ||| |||| ||| || ||| | | ||| || | || || | ||| Sbjct 333 AAGTTCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCATT--TGAA 390 Query 16180 TATATCTC-----TTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATA 16234 ||||| || | || || || | | ||||| ||||||| | | || | Sbjct 391 ATAATCTCCAAAATTCTTTCATTAGATATCTTATTATTTAA---GTGTTTATAGAGTAAA 447 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || ||||||||| |||| ||||| || || ||||| | || || ||||| ||| Sbjct 448 CATGCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGA 507 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||||| ||| || || || ||||| || ||||| ||||| || || || || Sbjct 508 CCAGGCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAG 567 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 |||||||||| || || ||||| || |||| || | || | ||| | | || Sbjct 568 ATACCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAATTATCTGAGC---CT 624 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||||||| ||||| | || |||| |||| ||||| ||||| ||| Sbjct 625 ATCCATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAATGTTTGTGATTGCTTTA 684 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | ||| |||| ||| || || ||||| || || | | || | Sbjct 685 AAAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTC 744 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 ||||| ||||| |||||||| || | ||| || |||||||||||||| || | ||| Sbjct 745 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATT 804 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 | | ||||| | | ||||||| || || || || |||||||||||| ||||| || Sbjct 805 TAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCG 864 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 ||||| ||||| | || |||||||| | |||||| ||| |||||| |||||| Sbjct 865 AAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCT 924 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 || ||| | | ||| || | || || ||||||| || |||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 16775 TACATTTTCCATATGTCTTCGTA 16797 ||||| |||||||| || | ||| Sbjct 985 TACATCTTCCATATATCATTGTA 1007 >seq1030 Length=862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 58104 GATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACGT 58163 ||||| || || ||||||||||| ||||| ||| ||||| | |||||||| ||||| Sbjct 513 GATGTTATTGGCATAGACGAAGGTCAATTCTTTGCAGATGTAGTAGAATTCTGCGAGAAA 454 Query 58164 ATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAG 58219 |||| || || || || |||||||||||||| | || |||||||| | ||| Sbjct 453 GTGGCCAATATGGGCAAGATAGTAATAGTTGCTGCGCTTGATGGTACATTCTAAAG 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462394961338400