Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3089 102 6e-17 seq3090 84.2 2e-11 >seq3089 Length=958 Score = 102 bits (112), Expect = 6e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 || ||||||||||||||||| || |||| || ||||| |||||||| ||||| | | Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 45169 CA-GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || |||||||| || ||||| ||||| | | ||| ||||| | Sbjct 776 AATGTT--CTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTG 719 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||||||| || ||| || ||| || | | | | |||| ||| | Sbjct 718 GGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAA 659 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | ||| || |||||||| |||| |||||| || ||||||| ||| Sbjct 658 CATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| || || ||||| || || |||||||| |||||||||||| || Sbjct 380 CCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTC 321 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || |||||||||||||| || || | | ||||| ||||| | Sbjct 320 AAGGTT--CTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTG 263 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || |||||||| || || ||| || | | | | |||| ||| | Sbjct 262 GGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTA 203 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| ||||| ||||| || || | ||||| || || || | |||||| Sbjct 202 CGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq3090 Length=995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| || || ||||| || || |||||||| |||||||||||| || Sbjct 380 CCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTC 321 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || |||||||||||||| || || | | ||||| ||||| | Sbjct 320 AAGGTT--CTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTG 263 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || |||||||| || || ||| || | | | | |||| ||| | Sbjct 262 GGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTA 203 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| ||||| ||||| || || | ||||| || || || | |||||| Sbjct 202 CGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394977725565124