Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12968 242 4e-59 >seq12968 Length=2778 Score = 242 bits (268), Expect = 4e-59 Identities = 592/884 (67%), Gaps = 21/884 (2%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||| |||||| | ||||| || ||||||||||| || || ||| ||||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATA 14030 ||||| | |||||||||||| |||| | |||| || |||| | || | Sbjct 217 TCCATCCACTCAAATGGATTTAAC-ACATTGTAGTACTTAGGTACT-CCTAAAGCAAAGA 274 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| |||||| || | || | |||||||||| |||||| | | |||||||||| || | Sbjct 275 GTAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAA 334 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||| || || | | || ||| ||| ||| || | ||||| | || || Sbjct 335 GTTCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCAT---TTGAAA 391 Query 14151 TAATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 14207 ||||| | |||| |||||||| || |||| |||||| | | |||||| | Sbjct 392 TAATCTCCAAAATTCTTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATG 451 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||||||| || | ||| |||||||| || || ||||| || ||||| | || | Sbjct 452 CAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAG 511 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 |||| ||||| || || || | ||| || || ||| |||||| || || || || || | Sbjct 512 GCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATAC 571 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | |||| ||||| || |||| ||||| ||| || | || || | || | ||||| Sbjct 572 CTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAA--TTATCTGAGCC-TATCC 628 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC--ATTGTTTCA-ATAGCATTAA 14444 ||||| |||||||| | ||||| || || || | ||||| || || |||| Sbjct 629 ATTTTAAGGCCCATTCGGCCTTTTTAGCAACAA---CCGGAATGTTTGTGATTGCTTTAA 685 Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATT 14503 | | || || |||| | | | ||||| |||||||| || ||| | || | Sbjct 686 AAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAG-AAGAGAGTAGGTC 744 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 || ||||| ||||| ||||| || | ||| || ||||| |||||||| || | | Sbjct 745 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATT 804 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 | | || | | | || |||| |||||||| ||| |||||| ||||||||||| || Sbjct 805 TAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCG 864 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCG 14683 ||||| || | | | |||||||||| || || ||| | ||||||||| ||| || Sbjct 865 AAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCT 924 Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 | ||| ||| | |||| ||| ||| | ||||| || | ||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||||| |||||| || || ||| || || || | |||||| Sbjct 985 TACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAA 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482223542445920