Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3091 113 3e-20 seq3090 113 3e-20 seq11541 100 2e-16 seq3089 100 2e-16 >seq3091 Length=1223 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | |||||| || |||| || || ||||| || ||||| ||||| ||||| Sbjct 1068 TTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTC 1009 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 || | ||| | | |||||||||||| || || || |||| | ||||| |||||| Sbjct 1008 GGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGG 949 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | || |||||||| ||| | |||||| | ||| |||||| ||||| Sbjct 948 TGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTC 889 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | ||||| ||||| || || || || |||| |||| Sbjct 888 AACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | || | ||| || ||||| || || | |||||||||||| || ||| | Sbjct 599 AGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTG 540 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || ||| |||| |||||||||||||| || | ||||||| Sbjct 539 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCC 480 Query 18228 TTATC 18232 ||||| Sbjct 479 TTATC 475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| || || || || || ||||| || |||||||| | ||| | | Sbjct 825 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 766 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | |||||| || || | || |||||||||||||| ||| | |||||||| Sbjct 765 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 706 Query 18230 ATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || | | | ||| |||||| | | | | ||||| ||| || |||| ||| Sbjct 705 GTC--CTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 648 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| ||||| || || |||||||| Sbjct 647 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | |||||| || |||| || || ||||| || ||||| ||||| ||||| Sbjct 840 TTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTC 781 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 || | ||| | | |||||||||||| || || || |||| | ||||| |||||| Sbjct 780 GGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGG 721 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | || |||||||| ||| | |||||| | ||| |||||| ||||| Sbjct 720 TGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTC 661 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | ||||| ||||| || || || || |||| |||| Sbjct 660 AACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | || | ||| || ||||| || || | |||||||||||| || ||| | Sbjct 371 AGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTG 312 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || ||| |||| |||||||||||||| || | ||||||| Sbjct 311 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCC 252 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | |||||| | ||| ||||| ||||| || | || Sbjct 251 TTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAATGTA 192 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | || ||||| || || || || ||||| | ||| ||| Sbjct 191 ATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTTT 150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| || || || || || ||||| || |||||||| | ||| | | Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | |||||| || || | || |||||||||||||| ||| | |||||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 18230 ATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || | | | ||| |||||| | | | | ||||| ||| || |||| ||| Sbjct 477 GTC--CTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 420 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| ||||| || || |||||||| Sbjct 419 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq11541 Length=746 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | || | ||| | ||| |||||||||| ||||||||||| | Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||| | ||||| || || | || ||||| | |||||| || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | | || ||||| | | ||| || || |||||| Sbjct 261 ATGCCCTCCTTGTCCTAAATCT-TAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAAC 203 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | |||||| ||||||| || | |||||| || ||||||| ||||||| Sbjct 202 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTTT 151 >seq3089 Length=958 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| ||||||||||| ||||| | | |||| | | |||||| | |||||| || Sbjct 806 GTTGATTCCTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCAAGTTGTTTACCA 747 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | ||||| |||||| || | || |||||||| ||| | |||| Sbjct 746 GCGAAGATCAATCTTTATTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTG 687 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| |||||| ||||| |||| ||||||| | ||||| ||||| || Sbjct 686 ACATTCTCAATGGTGTCAGATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTC 627 Query 18309 TTTACAAAAATTTGCATT 18326 || || || |||| |||| Sbjct 626 TTGACGAAGATTTACATT 609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | || | ||| || ||||| || || | |||||||||||| || ||| | Sbjct 371 AGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTG 312 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || ||| |||| |||||||||||||| || | ||||||| Sbjct 311 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCC 252 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | |||||| | ||| ||||| ||||| || | || Sbjct 251 TTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAATGTA 192 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | || ||||| || || || || ||||| | ||| ||| Sbjct 191 ATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTTT 150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| || || || || || ||||| || |||||||| | ||| | | Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | |||||| || || | || |||||||||||||| ||| | |||||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 18230 ATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || | | | ||| |||||| | | | | ||||| ||| || |||| ||| Sbjct 477 GTC--CTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTG 420 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| ||||| || || |||||||| Sbjct 419 ATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379250406825780