Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12968 120 3e-22 seq3091 113 4e-20 seq3090 113 4e-20 seq3089 113 4e-20 seq11541 111 1e-19 seq3088 87.8 2e-12 >seq12968 Length=2778 Score = 120 bits (132), Expect = 3e-22 Identities = 365/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||||| ||||||||| | | || | || ||||| | || ||| ||||| Sbjct 1001 GATATATGGAAGATGTACAAAGATTAAATGGCTTGCTTCTGGACTGCTGAGGAAATAGAC 942 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 | ||| ||| | | || ||||| ||||| || ||| | | | |||||||| Sbjct 941 TTAGCTACTGATGTTAAAGACTGGGAAAAACTCAACGATGGTGAAAAACACTTTATTAAG 882 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | || |||||||| || ||||| || ||| |||||||||| |||| Sbjct 881 CATGTTCTTGCCTTTTTCGCTGCTAGTGATGGAATAGTTCTTGAGAATTTGGCTTAAAGG 822 Query 57747 TTTT-CACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 || | ||| ||| | || | | ||||| |||||||||||||||||| || || || Sbjct 821 TTCTGCACT-GAAATCTAAATTCCTGAGGCTAGATGCTTTTACGGATTTTAAATGATGAT 763 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || ||||| | || || || ||||| ||||| ||| | | || | Sbjct 762 GGAGAACATTCACTCAGAGACCTACTCTCTTCTCATTGATACCTACATCACTGATCCATA 703 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || ||| || || || || ||| || || || | | || || ||||| || Sbjct 702 AGATAAAGACTTCCTTTTTAAAGCAATCACAAACATTCCGGTTGTTGCTAAAAAGGCCGA 643 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA---CGTTCGCCGAGAGGCTAATCGC 57982 ||| | | ||||||||| | | | | | | | ||||| || || | || Sbjct 642 ATGGGCCTTAAAATGGATA------GGCTCAGATAATTCCTATGCCGAAAGATTAGTAGC 589 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||||| || | |||||||| || || || ||| || || || || |||||||| Sbjct 588 ATTCGCTGCTATTGAAGGTATCTTTTTCTCAGGCTCATTCTGTGCTATCTTCTGGATGAA 529 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| ||||| | ||||| || ||||| || || || || | ||| | || || || Sbjct 528 GAAGCGCGGATTAATGCCTGGTCTGACATTCAGTAATGAACTCATAAGCAGAGATGAAGG 469 Query 58103 TCTCCATACTGATTTTGCGTG 58123 | || ||||||||||| || Sbjct 468 CATGCACACTGATTTTGCATG 448 >seq3091 Length=1223 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || ||||| | || |||||||| || Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||||||| | || ||||| || Sbjct 670 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 729 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| ||||| | ||||| | ||| | || || || || Sbjct 730 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 789 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| ||| |||| || ||| |||| || || Sbjct 790 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||| | |||||||| ||||| | || || || || || || | ||||| || || Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGAGCC 209 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | ||||| | || ||||||||||| | || ||||| Sbjct 210 ATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGA 269 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | || || ||||||||||| || |||||||| | || | |||||| Sbjct 270 TCAACAAAGACTCATCTTCGCTGGCAAGCAATTGGAAGATGGCAGAACCCTCTCCGATTA 329 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| | || || || ||||| ||||| || | ||||| || || |||| Sbjct 330 CAACATCTAGAAGGAGTCTACTCTCCATCTAGTTTTGAGACTTAGAGGAGGTA 382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||| ||||| ||||| || || ||||| || ||||| ||||||||||||| || Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAACCATCA 441 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || || ||||||||| | || ||||| || Sbjct 442 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCAA 501 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || || ||||| | ||||| | || ||||||| || ||| Sbjct 502 CAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAAC 561 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || | || || || || || || | || | ||||| || || |||| Sbjct 562 ATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGACTCAGAGGTGGTA 610 >seq3090 Length=995 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || ||||| | || |||||||| || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||||||| | || ||||| || Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| ||||| | ||||| | ||| | || || || || Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| ||| |||| || ||| |||| || || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 >seq3089 Length=958 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || ||||| | || |||||||| || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||||||| | || ||||| || Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| ||||| | ||||| | ||| | || || || || Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| ||| |||| || ||| |||| || || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||| ||||| |||||| |||| ||||| || |||||| | || ||||| || || Sbjct 610 ATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATCT 669 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || || ||||| || | || ||||| || Sbjct 670 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 729 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 | | | || |||||||| ||||| | ||||| | | || || | | || ||||| Sbjct 730 TAAAGATTGATCTTCGCTGGTAAACAACTTGAAGA-TGGAAGAACATTATCTGACTATAA 788 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||| ||||| || | ||| | ||| | ||| |||| || ||| || Sbjct 789 CATTCAAAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTTGA 840 >seq11541 Length=746 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||| |||||||||| || || || || |||||||| |||||| | || ||||| Sbjct 148 ATCAAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGA 207 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || || | | |||| |||||| | || ||||||||| ||| | || || Sbjct 208 GCCCTCAGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACC 267 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-G 31364 ||| || || | || ||||||||||| |||||| | ||||| | | || || | | | Sbjct 268 CGATCAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGA-TGGAAGAACATTATCAG 326 Query 31365 ATTATAACATTCAAAAAGAATCGAC 31389 | || ||||| |||||||||| || Sbjct 327 ACTACAACATCTAAAAAGAATCTAC 351 >seq3088 Length=519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||| |||||||||| || || || || |||||||| |||||| | || ||||| Sbjct 149 ATCAAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGA 208 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || || | | |||| || ||| | || |||||| || ||| | || || Sbjct 209 GCCCTCAGATACAATTGAAAACGTGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACC 268 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||| || | | | || || || || ||| || | ||||| | ||| | || Sbjct 269 CGATCAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGA 328 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||||| || ||||| || | ||| | ||| | ||| |||| || ||| || Sbjct 329 CTATAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTTGA 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445653598812480