Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12968 233 2e-56 seq13015 212 8e-50 >seq12968 Length=2778 Score = 233 bits (258), Expect = 2e-56 Identities = 598/897 (67%), Gaps = 24/897 (3%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||| ||||| || || | || || || || || || || ||| | ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| | ||||| ||||| |||||||| || | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | |||||| || || |||| ||||||| ||| | | | ||||||| || || ||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 33471 TTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | |||||| ||||| || | | ||| ||| |||||| |||| ||||||| ||||| Sbjct 337 TCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAAT-----AAATGTTTAAACATCAAACAT 33584 || || | | |||| | | | || | || || |||||| | | |||||| Sbjct 396 C--TCCAAAATTCT-TTCATTAGAT--ATCTTATTATTTAAGTGTTTATAGAGTAAACAT 450 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || ||||| ||||| || || ||||| || || | ||| ||| || || || || Sbjct 451 GCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCA 510 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||||| || ||||| || | ||| || || | | |||||| || || || ||||| Sbjct 511 GGCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATA 570 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG----TAT 33760 ||||| | ||||| || || | | ||| || |||| || | || || ||| Sbjct 571 CCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTAT 626 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAA 33819 ||| ||| ||||| |||||||| || ||| || || |||| | || || |||| Sbjct 627 CCATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAA 685 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 | || ||| ||| || | ||| | | || ||||| || | |||| || | | Sbjct 686 AAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCT 745 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | || |||||||| || || ||| | ||||||||| || ||||||||||| | ||| | Sbjct 746 CTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTT 805 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | ||| || || || | || || ||||| ||| |||||||||||||| || || | Sbjct 806 AGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGA 865 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCA 34058 |||| || | ||||| || ||||| | |||||| | | || | ||||| | ||| || Sbjct 866 AAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT-TGAGTTTTTCCCAGTCT 924 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 || | ||| ||| || || | ||| || | ||||| || | ||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||| ||||| || |||| ||| ||| || || || ||||| | || |||||| Sbjct 985 TACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTT 1041 >seq13015 Length=2880 Score = 212 bits (234), Expect = 8e-50 Identities = 971/1518 (64%), Gaps = 43/1518 (3%) Strand=Plus/Minus Query 62365 CTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAA 62424 |||| | ||||| |||||||| | || || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 62425 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62484 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 62485 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544 | |||||||| || || | | | || | ||||| | | | || | | ||| Sbjct 2096 TTGGCATAGGAGCAACTAGGAGAGAGTTACGGGCACCGTGTTACATAACTTCCTATCTTA 2037 Query 62545 GATGTTCCCAATT---CCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAA 62601 | || ||||| || | | ||| | || | ||| |||| Sbjct 2036 GTGTTTACCAATCATACCTTGTAGTATAAGGTTCTTCATTCCATAGATCAAATT--AGAA 1979 Query 62602 TA--CCGTTACTG-GCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTA 62658 | || |||||| | | | | | || | |||| ||||| || || || | | ||||| Sbjct 1978 TTTTCCTTTACTGAGTGGAGAACCTTAGA-ATGTTTCATAAGGGCCCTCTTCTTTAGCTA 1920 Query 62659 GTTTACA--ACTC--GCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 ||| | | || || || || ||| | ||||||||| ||||| |||||||| || Sbjct 1919 GTTGAATTGATTCAAGCATCGAA-GCA---TGATAAATGGTCTCAAATATCTTCTTGTTC 1864 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA-AACGCGTCCGCTAA 62773 | ||| ||||| ||||||| | ||||| || | || || | || |||| Sbjct 1863 AAATCAGCAGCTTCATCTGATTCAAATGCA-AATTTCAGTAATTAGAAAGTATCAGCTAG 1805 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 ||| | |||||| ||||| |||||||| || | |||||| |||| |||||| | Sbjct 1804 TCCCTAAACACCTATACCAATAGGTCTGTGACGGAGATTAGATTTTTCGGCTTCTTCTAC 1745 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 || || | || | ||| || || || || | ||| | ||||| ||| || Sbjct 1744 TGGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCGAGTTATTACACGAGTCACTTC 1685 Query 62894 CTTCAGTTTGAGAAAATCAAA--TCGCCCAT-CTAT-TACAAACATGTTCAATGCAACA- 62948 | ||| | | ||||||| || | || || | | || | || | | | | | Sbjct 1684 ATGGAGTCTTTCATAATCAAAGGTCTACGATTCTTTGTTCACATATCTAGGAAGAGATAT 1625 Query 62949 -GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 || || |||||||| || || | |||| | | |||| | ||| ||| ||| Sbjct 1624 TGAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGTGTATTCGACTATTTCACAGCA 1565 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | || || || ||||||| | || || ||||| || |||||||| Sbjct 1564 AAGGTTGGATGATTTTATTGTACCTAAATGCTATTAGTTTGATTTTTTATTGCACGCATC 1505 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||||| || ||| ||||||| |||||||| |||||||| ||||| |||| ||| | Sbjct 1504 TTTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGAGATTCAATAATAGCTTCCCAAA- 1446 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC--TCTTTCGTATAGAGT--ATACA 63183 | | || |||| || | || | | |||| | |||||| ||| | ||| | Sbjct 1445 GTTTTTAGGCTTTGATA---ACTTTTTTGCCCTTGCCTTCTTTCTCATACTTTTCATAAA 1389 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 ||| || || ||||| |||||| | || | || |||| ||||| | | Sbjct 1388 GCTTTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGGGTGCCTCATTAGGACAGAAAA 1329 Query 63244 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 | ||| ||||| | | |||||||| |||||||| ||||| || | ||| | ||| Sbjct 1328 GTGTCCAATCTCCATTAGACTTCACTCTATTCATAAATAGATCTGGCACCCATAAAGCAT 1269 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 ||| |||||||| | ||| | |||||| || || ||||| || | || || Sbjct 1268 AAAAGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGTTCTTCTTCATCATAAGAAAAT 1209 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | || ||||| |||||| ||||| | || ||||| | || || ||| | Sbjct 1208 CGAAAACATCAGCATGCCAAGGTTCTAGATAAATGGCAAAGGAACCTTTCCTTTTACCAC 1149 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | || || || | |||||||| || | ||| |||| | ||||||||||| | || | Sbjct 1148 CACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACCTTTAACATTGGAATTAAGCCAT 1089 Query 63484 TTGATATACCATTGGTACCGGAGATATA---GCCTCCACTGGCACGAATATTACTAATTG 63540 | || ||||| || || ||||| |||| | || | ||| | ||||| Sbjct 1088 TAGAGTAGCCATTAGTGCCTTTAATATAAGAGCCTGAA---GCTCTTATACAATGAATTG 1032 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | || || ||||| || || ||||| ||||| || | || | | || || |||| Sbjct 1031 AAAGTCCAATTCCACCAGCTGACTTAGATATTAAAGCAGTTTGTCTAAGAGTATCGTAGA 972 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC--G 63658 | |||| ||| ||| || |||| | | || ||||| |||||||| || | | Sbjct 971 TACCTTGTATTGAATCGTCTTTCATAGTCAAAAGGAAACATGAAGACATTTA-TGGCTTG 913 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || || || | || ||||| ||||||| || || ||||||||||| || || | || Sbjct 912 GGT-GTACCAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAACCATTTATCTGACATTAA 854 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 || || || ||||||||| | || ||| || || ||||||| | || | ||| Sbjct 853 ATGATAAGTTTCAATAGCTCTCTTTACATCATTTTTGTGGATTCCTATGGATACTCTCAT 794 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 ||||| | ||||||| |||||| ||||| | | ||| | || ||||| || || Sbjct 793 CAACATTTATTGAGGTCGTTCAACGATTTTTCCATGAACTTTGAGTAAATAGGACTTCTC 734 Query 63839 CAAAGTTTTAAAACCAAA 63856 || |||||||| ||||| Sbjct 733 TAAGGTTTTAAAGCCAAA 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629658224656320