Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13015 282 4e-71 seq2699 82.4 7e-11 seq2698 82.4 7e-11 seq2697 82.4 7e-11 >seq13015 Length=2880 Score = 282 bits (312), Expect = 4e-71 Identities = 999/1535 (65%), Gaps = 53/1535 (3%) Strand=Plus/Minus Query 37103 TACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTC 37162 |||| || || ||||||| ||| ||||| || || ||| || |||| ||||| | Sbjct 2228 TACTAATGAGGTCTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCC 2169 Query 37163 TTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAG 37222 ||||||| || | |||| | || || ||||||| ||| ||||| || | ||||||||| | Sbjct 2168 TTCTTGTGTAGACATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTG 2109 Query 37223 ATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAA 37282 | || |||||||| ||||| || || | ||| || || | || ||| ||| Sbjct 2108 AAGTTGATGCAGTTGGCATAGGAGCAACTAGGAGAGAGTTACGGGCACCGTGTTACATAA 2049 Query 37283 TTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG-----GGTTCTTTAA-CCACA 37336 | || | ||||| | |||||| ||| | ||| | ||||||| | ||| | Sbjct 2048 CTTCCTATCTTAGTGTTTACCAATC--ATACCT-TGTAGTATAAGGTTCTTCATTCCATA 1992 Query 37337 TATCATATTGTAGAATA--CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCC 37394 |||| ||| ||||| |||||||| ||||||| | | |||| |||||||| || Sbjct 1991 GATCAAATT--AGAATTTTCCTTTACTGAGTGGAGAACCTTAGAATGTTTCATAAGGGCC 1934 Query 37395 GTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTG-CG--GCATAATATATTGTTTCGAA 37451 | ||||||||||| | | ||||| || || |||| ||| || || || || Sbjct 1933 CTCTTCTTTAGCTAGTTG---AATTGATTCAAGCATCGAAGCATGATAAATGGTCTCAAA 1877 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAA 37511 || | | || || ||||| || || |||||| | || |||| || Sbjct 1876 TATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCAAATTTCAGTAATTAGAA 1817 Query 37512 CACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGA 37571 |||||| | |||| |||||| ||||| || ||||| || ||||||| | Sbjct 1816 AGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGACGGAGATTAGATTTTTC 1757 Query 37572 CGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT-------TTA- 37623 | |||| ||||| || | |||| ||| || || || |||| ||| ||| Sbjct 1756 GGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCGAGTTATTAC 1697 Query 37624 ACTAGTATTTTCGTA-ATTATTCTCAACTTGTCGAACATAAATACGTTA--TTATTAACA 37680 || ||| ||| | | | || ||| | || || | |||| | || || ||| Sbjct 1696 ACGAGTCACTTCATGGAGTCTT-TCA--TAATCAAAGGTC--TACGATTCTTTGTTCACA 1642 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740 || || | || || || | |||||||| ||||||| ||||||| | | || Sbjct 1641 TATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGTGTAT 1582 Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA-TTGGA 37799 | | || || || || || ||| | ||||| || |||| ||| | | || || Sbjct 1581 TCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAAT-GCTATTAGTTTGA 1523 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 ||||||||| || | ||||||||| || || || || || || |||| ||||| || Sbjct 1522 TTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGAGATTC 1463 Query 37860 GATAATAGATTTCCATAAACTTCTT--GCTTTAACGATCGCTTTAAtttt---tttCTTT 37914 ||||||| || ||| || || || ||||| ||| |||| ||| || | || Sbjct 1462 AATAATAGCTTCCCA--AAGTTTTTAGGCTTT---GATAACTTT--TTTGCCCTTGCCTT 1410 Query 37915 GTTTCGTATTCTATATATAAT--TTGTTAAAATCATTCCCCCATACATCGCATAATCCTG 37972 |||| || || | |||| || | ||| || | || | ||||| ||| || | Sbjct 1409 CTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGG 1350 Query 37973 GACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATA 38032 | || ||||| | || | ||| ||| ||| | || | | |||||||| Sbjct 1349 GTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTCATAAATA 1290 Query 38033 AATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACAT 38092 ||| || |||||||| ||| ||| | |||| | | ||| ||||| || || || | Sbjct 1289 GATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGT 1230 Query 38093 TCTTTCTTAAGCTTA-GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGAC 38151 |||| ||| | | || |||||||||| | |||||| ||||| ||||||| |||||| | Sbjct 1229 TCTT-CTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAAATGGCA 1171 Query 38152 ATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATT 38211 | | ||| |||||| |||| || || | || ||||||| | || | ||| | | Sbjct 1170 AAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACC 1111 Query 38212 CTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTA 38271 ||||||| || | || |||||||| | ||| || | || ||||||| || | Sbjct 1110 TTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAAGAGCCTGAA 1051 Query 38272 GCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 |||| |||| | || || | ||| |||||||| || || ||||||||||| | Sbjct 1050 GCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAAGCAGTT 991 Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAA 38391 ||| | | ||||| | ||||||| ||| || || || || | | | ||||| Sbjct 990 TGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGGAAACAT 931 Query 38392 CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAAC 38451 |||||||| ||| || || || | ||| ||||| ||||||| ||||| | ||| Sbjct 930 GAAGACATTTATGGCTTGGGTGTACCAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAAC 871 Query 38452 CATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATA 38511 ||||| || |||| ||| ||| ||||| || | | || |||| ||| || Sbjct 870 CATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTTTGTGGATT 811 Query 38512 CCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTA 38571 |||| ||||| ||||| | ||| | ||| |||| ||| | ||||| || ||| Sbjct 810 CCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCATGAACTTTG 751 Query 38572 AGTAGATACGATTTTTCTAATGTTTTTATTCCAAA 38606 |||| ||| || || ||||| ||||| | ||||| Sbjct 750 AGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 >seq2699 Length=1656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 55943 AAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCATTTGGTAATATT 56002 || ||| | || || | |||||||||||||||| |||| |||||||||||| | ||| Sbjct 1332 AAGATTTTCATTATTTCAGCATTAGATGGAACATTTGAATAGAAACCATTTGGTTAAATT 1391 Query 56003 CTTAATCTTATACCATTATCGGAAAAAGTTACTAAATTAAATGCTATATG 56052 | | |||||||||||| || || | ||||||||||||| ||||| Sbjct 1392 CCCTAAATTATACCATTATGCGATGAAATATCTAAATTAAATGCAATATG 1441 >seq2698 Length=1612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 55943 AAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCATTTGGTAATATT 56002 || ||| | || || | |||||||||||||||| |||| |||||||||||| | ||| Sbjct 1288 AAGATTTTCATTATTTCAGCATTAGATGGAACATTTGAATAGAAACCATTTGGTTAAATT 1347 Query 56003 CTTAATCTTATACCATTATCGGAAAAAGTTACTAAATTAAATGCTATATG 56052 | | |||||||||||| || || | ||||||||||||| ||||| Sbjct 1348 CCCTAAATTATACCATTATGCGATGAAATATCTAAATTAAATGCAATATG 1397 >seq2697 Length=1937 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 55943 AAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCATTTGGTAATATT 56002 || ||| | || || | |||||||||||||||| |||| |||||||||||| | ||| Sbjct 1613 AAGATTTTCATTATTTCAGCATTAGATGGAACATTTGAATAGAAACCATTTGGTTAAATT 1672 Query 56003 CTTAATCTTATACCATTATCGGAAAAAGTTACTAAATTAAATGCTATATG 56052 | | |||||||||||| || || | ||||||||||||| ||||| Sbjct 1673 CCCTAAATTATACCATTATGCGATGAAATATCTAAATTAAATGCAATATG 1722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468406239799360