Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13015 208 1e-48 seq12968 197 2e-45 >seq13015 Length=2880 Score = 208 bits (230), Expect = 1e-48 Identities = 766/1183 (65%), Gaps = 20/1183 (2%) Strand=Plus/Minus Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 ||||||||| || || |||||||| || | ||| ||||| ||||||| | | Sbjct 1891 ATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCA-A 1833 Query 65540 ATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 |||| || | || || | || |||| ||| | |||||| ||||| |||||||| || | Sbjct 1832 ATTTCAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGAC 1773 Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 |||||| |||| |||||| | || || | || | ||| || || || || | Sbjct 1772 GGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTA 1713 Query 65659 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCA---T 65715 ||| | ||||| ||| || | ||| | | ||||||| || | Sbjct 1712 AATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCTACGATT 1653 Query 65716 CTAT-TACAAACATGTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAG 65772 || | | || | || | | | | | || || ||||||||||| || | |||| | Sbjct 1652 CTTTGTTCACATATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATCTG 1593 Query 65773 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 65832 | |||| | ||| ||| |||||| || | || || || ||||||| | Sbjct 1592 GGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAATGCT 1533 Query 65833 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 65892 || || ||||| || |||||||| ||||| || ||| ||||||| |||||||| Sbjct 1532 ATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCTT 1473 Query 65893 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCT 65952 |||||||| ||||| |||| ||| | | | || |||| ||| ||| | | || Sbjct 1472 GTTGAGATTCAATAATAGCTTCCCAAA-GTTTTTAGGCTTTG--ATAACTTTTTTGCCCT 1416 Query 65953 TTTCT-CTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 | || ||||| ||| | | ||| | ||| || || ||||| |||||| | | Sbjct 1415 TGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGTA 1356 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 | || || |||| ||||| | | | ||| ||||| | | |||||||| |||| Sbjct 1355 AGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTCA 1296 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 |||| ||||| || | ||| | ||| ||| | |||||| | ||| | |||||| || | Sbjct 1295 TAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTAC 1236 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | ||||| || | || || | | || |||| |||||| ||||| | || | Sbjct 1235 CGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAAA 1176 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 |||| | || || ||| || || || || | |||||||| || | ||| Sbjct 1175 TGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTGA 1116 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTT 66308 |||| | ||||||||||| | ||||| || ||| ||||| || || ||||| Sbjct 1115 AAACCTTTAACATTGGAATTAAGCCATTAGA-GTAGCCATTAGTGCCTTTAATATAAGAG 1057 Query 66309 CCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 || || | ||| | |||||| || || ||||| || || ||||| ||||| Sbjct 1056 CCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAA 997 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || | || | | ||||| ||||| || | ||| ||| || |||| | | || Sbjct 996 GCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGG 937 Query 66429 AAACAGCTAGACATTTGGTGAC--GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||||| |||||||| || | | | || || | || ||||| ||||||| || | Sbjct 936 AAACATGAAGACATTTA-TGGCTTGGGT-GTACCAGAGTTGAATAAAGTAGGAGTGGCAT 879 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | ||||||||||| || || | || || || || ||||||||| | || ||| || Sbjct 878 GAGTAAACCATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTT 819 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 || ||||||| | || | ||| ||||| | ||||||| ||||||||| || | Sbjct 818 TGTGGATTCCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCAT 759 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 | ||| | || ||||| || || || |||||||| ||||| Sbjct 758 GAACTTTGAGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 65158 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 65217 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 65218 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 65278 TCGGCATAGGTGCCAC 65293 | |||||||| || || Sbjct 2096 TTGGCATAGGAGCAAC 2081 >seq12968 Length=2778 Score = 197 bits (218), Expect = 2e-45 Identities = 588/894 (66%), Gaps = 16/894 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||| ||||| || || | || || || || || || || ||| || ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| | || |||||||| | ||||| || || | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | |||||| || ||||||| ||||||| ||| | | | ||||||| || |||||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 36047 TTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | |||||| ||||| || | | ||| ||| |||||| | || || | || ||||| Sbjct 337 TCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 | | | |||| | | || ||| |||||| | | |||||||| || Sbjct 396 CTCCAAAATTCTTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGCAAA 455 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||| ||| | || || ||||| || || | ||| || || || || || ||||| Sbjct 456 ATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGGCAT 515 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTT 36284 || || ||||| || | ||| || || | | || ||||| || || || || || |||| Sbjct 516 TAATCCGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAGAAAAAGATACCTT 574 Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG----TATCCAC 36340 | | || || || || | | ||| || |||| || | | || || |||||| Sbjct 575 CAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTATCCAT 630 Query 36341 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT-ATAGCATTAAAGAG 36399 ||| ||||| |||||||| || ||| || || || | | || || ||||| || Sbjct 631 TTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAAAAG 689 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 ||| ||| || | ||| | | || |||||||| | |||| || | || || Sbjct 690 GAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTCTGA 749 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 |||||||| || || ||||| ||||||||| || ||||||||||| | ||| | | Sbjct 750 GTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTAGAT 809 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 ||| || || || | || || ||||| ||| |||||||| ||||| || || ||||| Sbjct 810 TTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAAAAA 869 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTC-GTTTGGTGTTAGTTTATTCCAATCATTGA 36638 || | ||||| || ||||| | |||||| | || | ||||| | ||| || || | Sbjct 870 GGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT-TGAGTTTTTCCCAGTCTTTAA 928 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||| ||| || || | ||| || | ||||| || | ||| | | ||| |||| Sbjct 929 CATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGTACA 988 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | ||||| || |||| ||| || || || || ||||| | || |||||| Sbjct 989 TCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658006249372960