Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3089 89.7 5e-13 seq14708 87.8 2e-12 seq11541 87.8 2e-12 seq3088 86.0 6e-12 >seq3089 Length=958 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | || || || |||||||||||||| || | ||| || ||| Sbjct 821 AATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCT 762 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || || ||||||||||| |||||| | || |||||||| || || || || || || Sbjct 761 TCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGGGATACCCTCCTTATC- 703 Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | || | | || | ||||| | ||||| || |||| ||| | || Sbjct 702 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAAGGGTGATGGT 643 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||||| || || ||||| |||| ||| Sbjct 642 CTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq14708 Length=579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | || || || || ||||||||||| || | || || ||| Sbjct 444 AATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGATAAAGTTCTTCCATCT 385 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || |||| ||| || ||| |||||| | || |||||||| || || ||||| || || Sbjct 384 TCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGAATACCTTCCTTATCT 325 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||||||| ||| | | ||| | |||||| | ||||| || || | || | ||| Sbjct 324 TAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACATCTAAAGTAATGGTC 265 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || || || ||||| ||||| || | |||| || Sbjct 264 TTTCCAGTTAATGTTTTAACGAAGATCTACATACCT 229 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||| |||||||| | ||||| ||||||| ||||| || || Sbjct 231 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 172 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | |||||||||||| | || || | | ||||| || || Sbjct 171 AATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTGGA 112 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| ||| | | || | || || | ||||| || Sbjct 111 ATACCTTCTTTGTCCTAGATCTTTGCTTTCACATTCTCAATGGTATCTGATGGCTCTACG 52 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| ||||| || | ||| Sbjct 51 TCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACAT 5 >seq11541 Length=746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | || || || || ||||||||||| || | || || ||| Sbjct 594 AATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGATAAAGTTCTTCCATCT 535 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || |||| ||| || ||| |||||| | || |||||||| || || ||||| || || Sbjct 534 TCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGAATACCTTCCTTATCT 475 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||||||| ||| | | ||| | |||||| | ||||| || || | || | ||| Sbjct 474 TAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACATCTAAAGTAATGGTC 415 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || || || ||||| ||||| || | |||| || Sbjct 414 TTTCCAGTTAATGTTTTAACGAAGATCTACATACCT 379 >seq3088 Length=519 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | || || || || ||||||||||| || | || || ||| Sbjct 367 AATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGATAAAGTTCTTCCATCT 308 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || |||| ||| || ||| |||||| | || |||||||| || ||||| |||||||| Sbjct 307 TCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGGATGCCCTCTTTGTCC 248 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 || || ||| | | ||| | ||| || | |||||| || || | ||| | || Sbjct 247 TAAATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTCAACATCTAAGGTGATAGTT 188 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||| |||| ||| Sbjct 187 TTGCCAGTGAGTGTTTTAACGAAAATTTACAT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495938471004800