Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13015 298 8e-76 seq12968 233 3e-56 >seq13015 Length=2880 Score = 298 bits (330), Expect = 8e-76 Identities = 993/1517 (65%), Gaps = 41/1517 (3%) Strand=Plus/Minus Query 79037 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 79096 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 79097 TATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCG 79156 ||| |||| || ||||| | |||||||| || || || ||||| | ||||||||| | Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 79157 TTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTA 79216 |||||||||| || || | | | || | ||||| | | | | || | | ||| Sbjct 2096 TTGGCATAGGAGCAACTAGGAGAGAGTTACGGGCACCGTGTTACATAACTTCCTATCTTA 2037 Query 79217 GAGATTCCCAATC---CCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 | | || |||||| || | | | || | ||||||| |||||| ||| |||| Sbjct 2036 GTGTTTACCAATCATACCTTGTAGTATAAGGTTCTTCATTCCATAGATCAAATT--AGAA 1979 Query 79274 TA--CCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTA 79330 | || ||||| || | | || ||| | ||||||||||||| || || | || |||| Sbjct 1978 TTTTCCTTTACTGAGTGGA-GAACCTTAGAATGTTTCATAAGGGCCCTCTTCTTTAGCTA 1920 Query 79331 ATTCACA--ACTC--GCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTG 79386 || | | || || || || | | ||||||||| || || |||||||| || Sbjct 1919 GTTGAATTGATTCAAGCATCGAAG----CATGATAAATGGTCTCAAATATCTTCTTGTTC 1864 Query 79387 AGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATA-AACGCGTCTGCTA 79444 | ||| ||||| | | | ||||||| | ||||| || | || || | || |||| Sbjct 1863 AAATCAGCAGCTTCATCTGAT-TCAAATGCA-AATTTCAGTAATTAGAAAGTATCAGCTA 1806 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||| | |||||| ||||| |||||||| || | |||||| |||| |||||| | Sbjct 1805 GTCCCTAAACACCTATACCAATAGGTCTGTGACGGAGATTAGATTTTTCGGCTTCTTCTA 1746 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || | || | ||| || || || || | ||| | |||||| ||| | Sbjct 1745 CTGGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCGAGTTATTACACGAGTCACTT 1686 Query 79565 CCTTTAGTTTGAGAAAATCAAA--TCGTCCAT-CTAT-TACAAACATGTTCAACGCGACA 79620 | | ||| | | ||||||| || | || || | | || | || | | | || | Sbjct 1685 CATGGAGTCTTTCATAATCAAAGGTCTACGATTCTTTGTTCACATATCTAGGAAGAGATA 1626 Query 79621 --GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || || ||||||||||| || | |||| | | |||| | ||||||| || Sbjct 1625 TTGAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGTGTATTCGACTATTTCACAGC 1566 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | ||||| | || || || ||||||| | || || ||||| || ||||||| Sbjct 1565 AAAGGTTGGATGATTTTATTGTACCTAAATGCTATTAGTTTGATTTTTTATTGCACGCAT 1506 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | ||||| || ||| | ||||| |||||||| |||||||| ||||| |||| ||| | Sbjct 1505 CTTTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGAGATTCAATAATAGCTTCCCAAA 1446 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTAT-CTCTT---TTCTCTTTCGTATTGTGTATAT 79854 | | || |||| || |||| | | | ||| |||| | || || | | ||| Sbjct 1445 -GTTTTTAGGCTTTGATA---ACTTTTTTGCCCTTGCCTTCTTTCTCATACTTTTCATAA 1390 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | ||| || || ||||| ||||||| | ||| || || || | |||||| | Sbjct 1389 AGCTTTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGGGTGCCTCATTAGGACAGAAA 1330 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||| ||||||| | ||| |||| |||||||| ||||| || | ||| | ||| Sbjct 1329 AGTGTCCAATCTCCATTAGACTTCACTCTATTCATAAATAGATCTGGCACCCATAAAGCA 1270 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 ||| |||||||| | ||| | ||||| || || ||||| || | || || Sbjct 1269 TAAAAGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGTTCTTCTTCATCATAAGAAAA 1210 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | || ||||| |||||| ||||| | || ||||| | || | ||| Sbjct 1209 TCGAAAACATCAGCATGCCAAGGTTCTAGATAAATGGCAAAGGAACCTTTCCTTTTACCA 1150 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || || || | |||||||| || | ||| |||| | ||||||||||| | ||| Sbjct 1149 CCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACCTTTAACATTGGAATTAAGCCA 1090 Query 80155 TTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || || ||| ||||| || || ||||| || || | ||| | |||||| Sbjct 1089 TTAGA-GTAGCCATTAGTGCCTTTAATATAAGAGCCTGAAGCTCTTATACAATGAATTGA 1031 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || || ||||| || || ||||| ||||| || | || | | ||||| ||||| Sbjct 1030 AAGTCCAATTCCACCAGCTGACTTAGATATTAAAGCAGTTTGTCTAAGAGTATCGTAGAT 971 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC--GA 80331 || | ||| ||| || |||| | | || ||||| |||||||| || | | Sbjct 970 ACCTTGTATTGAATCGTCTTTCATAGTCAAAAGGAAACATGAAGACATTTA-TGGCTTGG 912 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391 | || || | || ||||| ||||||| || || ||||||||||| || |||| || | Sbjct 911 GT-GTACCAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAACCATTTATCTGACATTAAA 853 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 | || || ||||||||| | || ||| || || ||||||| | || | ||| Sbjct 852 TGATAAGTTTCAATAGCTCTCTTTACATCATTTTTGTGGATTCCTATGGATACTCTCATC 793 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 ||||| | ||||||| ||||||||| || || | ||| | || || || || || Sbjct 792 AACATTTATTGAGGTCGTTCAACGATTTTTCCATGAACTTTGAGTAAATAGGACTTCTCT 733 Query 80512 AAAGTTTTAAAACCAAA 80528 || |||||||| ||||| Sbjct 732 AAGGTTTTAAAGCCAAA 716 >seq12968 Length=2778 Score = 233 bits (258), Expect = 3e-56 Identities = 599/897 (67%), Gaps = 24/897 (3%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||| ||||| || || | || || || || || || || ||| | ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| | ||||| ||||| ||||| || || | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | |||||| || ||||||| ||||||| ||| | | | ||||||| || |||||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 49849 TTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | |||||| ||||| | || | | ||| ||| |||||| |||| |||| || ||||| Sbjct 337 TCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGG---ATGCAATAAATGTTTAAACATCAAACATGC 49964 || || | | |||| | | | || ||| |||||| | | |||||||| Sbjct 396 C--TCCAAAATTCT-TTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGC 452 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||||| ||||| || || ||||| || || ||||| || || || || || || Sbjct 453 AAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGG 512 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTC 50083 ||||| || ||||| || | ||| || || | | || ||||| || || || ||||| | Sbjct 513 CATTAATCCGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAGAAAAAGATAC 571 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG----TATC 50139 |||| | || || || || || | ||| || |||| || | || || |||| Sbjct 572 CTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTATC 627 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAA 50198 || ||| ||||| |||||||| || ||| || || |||| | || || ||||| Sbjct 628 CATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAA 686 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || ||| ||| || | ||| | | || ||||| || | |||| || | || Sbjct 687 AAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTC 746 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || |||||||| || || ||| | ||||||||| || ||||||||||| | ||| | Sbjct 747 TGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTA 806 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 | ||| || || || | || ||| ||||| ||| |||||||| ||||| || || || Sbjct 807 GATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAA 866 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTT--CGTTGGGTGTTAGTTTATTCCAATCA 50436 ||| || | ||||| || ||||| ||||||| | | | || ||||| | ||| || Sbjct 867 AAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTG--AGTTTTTCCCAGTCT 924 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || | ||| ||| || |||| ||| || | ||||| || | ||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||| ||||| || |||| ||| ||| || || || ||||| | || |||||| Sbjct 985 TACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718087042080160