Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12968 266 3e-66 >seq12968 Length=2778 Score = 266 bits (294), Expect = 3e-66 Identities = 598/884 (68%), Gaps = 21/884 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||| |||||| | ||||| || ||||||||||| || || ||| ||||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 13641 TCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13698 ||||| | ||||||||||||| |||| | |||| || |||| | || | Sbjct 217 TCCATCCACTCAAATGGATTTAAC-ACATTGTAGTACTTAGGTACT-CCTAAAGCAAAGA 274 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| ||||||||| | ||| | |||||||||| |||||| | | |||||||||| || | Sbjct 275 GTAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAA 334 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||| || || | | || ||| ||| ||| || | ||||| | || || Sbjct 335 GTTCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCAT---TTGAAA 391 Query 13819 TAAT-TGTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 |||| | || | ||| ||||||| || |||| |||||| | | |||||| | Sbjct 392 TAATCTCCAAAATTCTTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATG 451 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||||||| || | ||| |||||||| || || ||||| || ||||| | || | Sbjct 452 CAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAG 511 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||| ||||| || || || | ||| || || ||| ||||| || || || || || | Sbjct 512 GCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATAC 571 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | |||| ||||| || |||| ||||| ||| || | || || | || | ||||| Sbjct 572 CTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAA--TTATCTGAGCC-TATCC 628 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC--ATTGTTTCA-ATAGCATTAA 14112 ||||| |||||||| | ||||| || || || | ||||| || || |||| Sbjct 629 ATTTTAAGGCCCATTCGGCCTTTTTAGCAACAA---CCGGAATGTTTGTGATTGCTTTAA 685 Query 14113 ATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATT 14171 | | | || || |||| | | | ||||| |||||||| || ||| | || | Sbjct 686 AAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAG-AAGAGAGTAGGTC 744 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 || ||||| ||||| ||||| || | ||| || |||||||||||||| || | | Sbjct 745 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATT 804 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | | ||| | | | || |||| |||||||| ||| |||||| ||||||||||| || Sbjct 805 TAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCG 864 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 ||||| || | | | |||||||||| || || ||| ||||||||||| ||| || Sbjct 865 AAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCT 924 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| ||| | |||| ||| ||| | ||||| || | ||| | | ||| Sbjct 925 TTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTG 984 Query 14412 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||||| |||||| || || ||| || || || | |||||| Sbjct 985 TACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAA 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479606604829600