Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13015 226 4e-54 >seq13015 Length=2880 Score = 226 bits (250), Expect = 4e-54 Identities = 774/1191 (65%), Gaps = 28/1191 (2%) Strand=Plus/Minus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 ||| ||||||||| || || |||||||| || | ||| ||||| ||||||| Sbjct 1895 CATGATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATG 1836 Query 71498 GATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 | ||||| || | || || | || |||| ||| | ||| || ||||| ||||||||| Sbjct 1835 CA-AATTTCAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTG 1777 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || | |||||| |||| |||||| | || || | || | ||| || || || Sbjct 1776 TGACGGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTG 1717 Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCTCC 71674 || | ||| | |||||| ||| || | ||| | | ||||||| ||| | Sbjct 1716 TTTAAATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCTAC 1657 Query 71675 CAT-CTAT-TACAAACACGTTCAAGGCAACAGAT------GCCAGATTACAAACGGCTAC 71726 || || | | || | | || ||| || |||| || ||||||||||| || | Sbjct 1656 GATTCTTTGTTCACATA---TCTAGG-AAGAGATATTGAGGCGAGATTACAAACAGCAAT 1601 Query 71727 CTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 |||| | | |||| | |||||| |||||| || | || || || || Sbjct 1600 TTCATCTGGGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACC 1541 Query 71787 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACC 71846 ||||| | || || ||||| || |||||||| ||||| || || | ||||| || Sbjct 1540 TAAATGCTATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCC 1481 Query 71847 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT-ATTATATTCT 71905 |||||| |||||||| ||||| |||| ||| | | | || |||| || | || | Sbjct 1480 AGTTTCTTGTTGAGATTCAATAATAGCTTCCCAAA-GTTTTTAGGCTTTGATAACTTTTT 1422 Query 71906 TGTATCTCTT---TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 || | ||| |||| | || || | | ||| | ||| || || ||||| || Sbjct 1421 TG---CCCTTGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAA 1365 Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 ||| | ||| || || ||||| ||||| | | || ||| ||||||| | || | Sbjct 1364 CATCTTGTAAGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCA 1305 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082 ||| |||||||| ||||| || | ||| | ||| ||| |||||||| | ||| | | Sbjct 1304 CTCTATTCATAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATT 1245 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| || || ||||| || | || || | | || ||||| |||||| |||| Sbjct 1244 CCTCTTTACCGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTT 1185 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 | | || ||||| | || || ||| || || || || | |||||||| | Sbjct 1184 CTAGATAAATGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAG 1125 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 | | ||| |||| | ||||||||||| | ||||| || ||||| || || | Sbjct 1124 TTTCATTGAAAACCTTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAA 1065 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 |||| || || | ||| |||||| || || ||||| || || |||| Sbjct 1064 TATAAGAGCCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAG 1005 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 | ||||| || | || | | ||||| ||||| || | ||| ||| || |||| Sbjct 1004 ATATTAAAGCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAG 945 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGAC--GACTAGTTCCCGCATTAAATAAGGTAGG 72440 | | || ||||| |||||||| || | | | || || | || ||||| ||||| Sbjct 944 TCAAAAGGAAACATGAAGACATTT-ATGGCTTGGGT-GTACCAGAGTTGAATAAAGTAGG 887 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 || || || ||||||||||| || |||| || || || || ||||||||| | || Sbjct 886 AGTGGCATGAGTAAACCATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTAC 827 Query 72501 ATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 ||| || || ||||||| | || | ||| ||||| | ||||||| ||||||||| Sbjct 826 ATCATTTTTGTGGATTCCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGAT 767 Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 72611 || || | ||| | || ||||| || || || |||||||| ||||| Sbjct 766 TTTTCCATGAACTTTGAGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71120 CTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 71179 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 71180 TATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 71239 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 71240 TCGGCATAGGTGCCAC 71255 | |||||||| || || Sbjct 2096 TTGGCATAGGAGCAAC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670969368225440