Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3091 114 1e-20 seq3090 114 1e-20 seq3089 114 1e-20 seq11541 98.7 1e-15 seq14708 86.0 6e-12 >seq3091 Length=1223 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | ||||| || ||||| || ||||| || || | || || ||||| Sbjct 819 AACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTC 760 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| | || || | ||| |||||||| || || ||||| ||||| Sbjct 759 GAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTA 700 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | |||||| || |||| ||| | ||||| Sbjct 699 GATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTT 640 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 639 TCCAGTCAAAGTTTTGACGAAGATTTGCATA 609 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||||| ||| | ||||| || || | |||||||||||| Sbjct 380 CCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAG 321 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| || ||||| |||| || | ||| ||||||||||| Sbjct 320 AGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGG 261 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | || ||||| Sbjct 260 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACG 201 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTTT 143196 || | || | ||||| ||||| || || || ||||| || | ||| || |||||| Sbjct 200 TCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACAT--GTTTTGTTTT 144 >seq3090 Length=995 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | ||||| || ||||| || ||||| || || | || || ||||| Sbjct 591 AACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTC 532 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| | || || | ||| |||||||| || || ||||| ||||| Sbjct 531 GAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTA 472 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | |||||| || |||| ||| | ||||| Sbjct 471 GATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTT 412 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 411 TCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq3089 Length=958 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | ||||| || ||||| || ||||| || || | || || ||||| Sbjct 591 AACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTC 532 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| | || || | ||| |||||||| || || ||||| ||||| Sbjct 531 GAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTA 472 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | |||||| || |||| ||| | ||||| Sbjct 471 GATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTT 412 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 411 TCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | || |||||||| | || ||||| ||||| ||||| || || Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| |||||||||||||| |||||| | || |||||||| || Sbjct 776 AATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGGG 717 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||| | || || || Sbjct 716 ATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACA 657 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || ||||| |||| ||| Sbjct 656 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq11541 Length=746 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||| ||||| || | |||||||||||||| |||||||| || Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || ||||| ||||| | || || | | |||||||| || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||| || ||| | | ||| | || || | ||| || || Sbjct 261 ATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAACA 202 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | |||||| ||||| |||| ||| Sbjct 201 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACAT 155 >seq14708 Length=579 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||| ||||| || | |||||||||||||| |||||||| || Sbjct 231 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 172 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||||||||||| | || || | | ||||| || || Sbjct 171 AATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTGGA 112 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || ||| ||| | | || | || || | || ||||| Sbjct 111 ATACCTTCTTTGTCCTAGATCTTTGCTTTCACATTCTCAATGGTATCTGATGGCTCTACG 52 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || | ||| Sbjct 51 TCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACAT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506886100006080