Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12968 116 5e-21 >seq12968 Length=2778 Score = 116 bits (128), Expect = 5e-21 Identities = 233/342 (68%), Gaps = 5/342 (1%) Strand=Plus/Minus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 |||||||||||||| |||| ||||| |||||| | ||||| || | |||||| || Sbjct 788 TGCTTTTACGGATTTTAAATGATGATGGAGAACATTCACTCAGAGACCTACTCTCTTCTC 729 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 ||||| | ||||| ||||| || |||| || | || ||||| |||||| | Sbjct 728 ATTGATACCTACATCACTGATCCATAAGATAAAGACTTCCTTTTTAAAGCAATCACAAAC 669 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | ||| | | ||||||||| |||||| | ||||| | || || | Sbjct 668 ATTCCGGTTGTTGCTAAAAAGGCCGAATGGGCCTTAAAATGGATAGGCTCAGATAA---T 612 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 || || ||||| ||| | || |||||||| || | || || ||||| || || || | Sbjct 611 TCCTATGCCGAAAGATTAGTAGCATTCGCTGCTATTGAAGGTATCTTTTTCTCAGGCTCA 552 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || || | | ||||| ||| | |||||||||||| | ||||| || ||||| |||||| Sbjct 551 TTCTGTG-CTATCTTCTGGATGAAGAAGCGCGGATTAATGCCTGGTCTGACATTCAGTAA 493 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | ||| |||| || ||| | ||| ||| ||||| Sbjct 492 TGAACTCATAAGCAGAGATGAAGGCATGCACACTGATTTTGC 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740871674969440