Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3091 141 7e-29 seq3090 141 7e-29 seq3089 141 7e-29 seq3088 127 1e-24 seq14708 120 2e-22 seq11541 118 8e-22 seq5846 89.7 4e-13 >seq3091 Length=1223 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| ||||| || || || || ||||| || ||||| || ||| Sbjct 836 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 777 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 776 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 717 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| | || ||| ||| || |||| ||||| || ||| ||| Sbjct 716 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 657 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 656 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 609 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| ||||||| ||| || || || || || | |||||||||||| Sbjct 380 CCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAG 321 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| ||||| ||||||||| | || | | |||||| ||| || Sbjct 320 AGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGG 261 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| || | || ||||| || ||||| Sbjct 260 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACG 201 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || |||||||| ||||| || | || || || ||||| | ||| ||| Sbjct 200 TCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTTT 150 >seq3090 Length=995 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| ||||| || || || || ||||| || ||||| || ||| Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| | || ||| ||| || |||| ||||| || ||| ||| Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq3089 Length=958 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| ||||| || || || || ||||| || ||||| || ||| Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| | || ||| ||| || |||| ||||| || ||| ||| Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| |||||||| | ||| || || ||||| ||||| || || | Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| | |||||| |||||| | ||||| | || ||| ||| ||| Sbjct 776 AATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGGG 717 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||| ||| ||| ||| | || ||||| || || ||| Sbjct 716 ATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACA 657 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| ||| || || || |||| ||| Sbjct 656 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq3088 Length=519 Score = 127 bits (140), Expect = 1e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| |||||||| | ||| || || || || ||||| || || | Sbjct 382 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 323 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| | | ||| || || | ||||| | || ||| ||| ||| Sbjct 322 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGG 263 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || |||||||| |||| || ||| || || |||| || ||||| || || Sbjct 262 ATGCCCTCTTTGTCCTAAATCTTAGCT-TTCACGTTTTCAATTGTATCTGAGGGCTCAAC 204 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 ||||||||| || ||||| || || || ||||| || ||||||| ||| ||||| | | Sbjct 203 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTTTGATAGTTT 144 Query 15376 AATTTTAAT 15384 | ||||||| Sbjct 143 ACTTTTAAT 135 >seq14708 Length=579 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| || ||||| || | || || ||||||| |||||||| || | Sbjct 231 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 172 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||| ||||| |||||| |||| | | | ||| || |||| Sbjct 171 AATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTGGA 112 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| | || |||||| || ||| | || |||||||| ||||| Sbjct 111 ATACCTTCTTTGTCCTAGATCTTTGCT-TTCACATTCTCAATGGTATCTGATGGCTCTAC 53 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || || || |||||||| || || || | ||| Sbjct 52 GTCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACAT 5 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| |||||||| | ||| || || || || ||||| || || | Sbjct 459 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 400 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| | | ||| || || | ||||| | || ||| ||| |||| Sbjct 399 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 340 Query 15257 ATTCCTTCTTTGTCACA-AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || | | ||||||| || ||| |||| || || || || || Sbjct 339 ATACCTTCCTTATCTTAGATTTTTGCT-TTAACATTTTCAATTGTGTCAGATGGCTCAAC 281 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||||||| || || || | ||||| || || || | |||| Sbjct 280 ATCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACATA 232 >seq11541 Length=746 Score = 118 bits (130), Expect = 8e-22 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| || ||||| || | || || ||||||| |||||||| || | Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||| ||||| |||||| |||| | | | ||| ||| ||| Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| |||| || ||| || || |||| || ||||| || || Sbjct 261 ATGCCCTCCTTGTCCTAAATCTTAGCT-TTGACGTTTTCAATTGTATCTGAGGGCTCAAC 203 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 ||||||||| || ||||| || || || ||||| || ||||||| ||| ||||| | | Sbjct 202 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTTTGATAGTTT 143 Query 15376 AATTTTAAT 15384 | ||||||| Sbjct 142 ACTTTTAAT 134 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| |||||||| | ||| || || || || ||||| || || | Sbjct 609 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 550 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| | | ||| || || | ||||| | || ||| ||| |||| Sbjct 549 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 490 Query 15257 ATTCCTTCTTTGTCACA-AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || | | ||||||| || ||| |||| || || || || || Sbjct 489 ATACCTTCCTTATCTTAGATTTTTGCT-TTAACATTTTCAATTGTGTCAGATGGCTCAAC 431 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||||||| || || || | ||||| || || || | |||| Sbjct 430 ATCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACATA 382 >seq5846 Length=3076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||| | | |||||| | ||| || ||| ||| ||| || ||||||| Sbjct 790 CCACCTCTTAATCGAAGGATTAAATGTAAGGTTGATTCTCTTTATATATTCATATCGCTT 731 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || | ||||| ||| ||| ||||| |||| | | | |||||| || Sbjct 730 AAAGTTTTACTATCTTCACATTATTTTCCAGCAAATATTAGTCTCTATTGGTCAGGAGGG 671 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||||| ||||| | || | || ||| | | | ||||| Sbjct 670 ATACCTTCTTTGTCTTAAATTTTTGCCTTTATTGTCTCAAAGGAATCACAACTATCTACG 611 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15348 |||| ||||| |||| ||||| ||||| || Sbjct 610 TCTAGTGTAATTTTTTTGCCTGTTAGAGTCTT 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362089841789604