Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq14708 102 6e-17 seq11541 102 6e-17 seq3089 96.9 2e-15 seq16625 89.7 4e-13 seq3088 87.8 1e-12 >seq14708 Length=579 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||||||||||||||||||||| || ||||| | || || || ||||| ||||| || Sbjct 463 TCAACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTC 404 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 ||| | |||| || | | |||||||||||| ||||| | || || || | Sbjct 403 AGATAAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGG 344 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | |||||| |||||| | |||||| ||| || | ||| || || | ||||| Sbjct 343 TGGAATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTC 284 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| || || || ||||| || || || || || | ||| Sbjct 283 AACATCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 233 >seq11541 Length=746 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||||||||||||||||||||| || ||||| | || || || ||||| ||||| || Sbjct 613 TCAACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTC 554 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 ||| | |||| || | | |||||||||||| ||||| | || || || | Sbjct 553 AGATAAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGG 494 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | |||||| |||||| | |||||| ||| || | ||| || || | ||||| Sbjct 493 TGGAATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTC 434 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| || || || ||||| || || || || || | ||| Sbjct 433 AACATCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 383 >seq3089 Length=958 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||||||||||||||||||||| || ||||| | || || |||||||| ||||| || Sbjct 840 TCAACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTC 781 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 |||| | |||| || | |||||| || || || ||||| | || || || | Sbjct 780 AGATAATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGG 721 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | ||| || |||||| ||| || ||||| | ||| || || | ||||| Sbjct 720 TGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTC 661 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || || || || || || |||||||| || || |||| ||| Sbjct 660 AACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq16625 Length=1685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||||| |||||||| || ||||| |||||||||||||||||||| | Sbjct 810 CCCCCTCTTAGCCTTAAAACCAAATGAAGAGTGCTTTCTTTTTGAATATTATAATC-TGA 868 Query 43955 AATTGACGCTCATCGTC-CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| | || || |||| ||| || |||||||||| || | | || | || Sbjct 869 GAGTGAATTTAATAATCTTAATTATTTCCCAGCAAATATCATTCGCTATTAATCTGGTGG 928 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || ||||||||||| | | || | ||| || ||| | || || || || || Sbjct 929 TATGCCTTCTTTATCCTAGACTTAATATTTTACTTCTCCAATATAATTTGAAGGTTCTAC 988 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || | ||||||||| || | |||||| | ||| || ||||| Sbjct 989 GTCTAAAGTTACTGTTTTACCAGTGAGAGTCTTTAAAAAAATCTGCAT 1036 >seq3088 Length=519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||||||||||||||||||||| || ||||| | || || || ||||| ||||| || Sbjct 386 TCAACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTC 327 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 ||| | |||| || | | |||||||||||| ||||| | || || || | Sbjct 326 AGATAAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGG 267 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | || ||||| || |||| || ||| || | ||| ||||||| ||||| Sbjct 266 TGGGATGCCCTCTTTGTCCTAAATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTC 207 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || || ||||| || || | || || || || |||| ||| Sbjct 206 AACATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACAT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354690067940112