Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12968 201 1e-46 >seq12968 Length=2778 Score = 201 bits (222), Expect = 1e-46 Identities = 571/862 (66%), Gaps = 19/862 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||| |||||| | ||||| || ||||| |||||||| || ||| || ||||| || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA-ATAGTATTTTTTAC--AC-CCTAATTCTAG 12975 ||||| | || || |||||| |||| || ||| | ||| || ||||| | | Sbjct 217 TCCATCCACTCAAATGGATTT----AACACATTGTAGTACTTAGGTACTCCTAAAGCAAA 272 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 | | ||| ||||| ||||| | ||| || || |||||| | | | ||||| || || Sbjct 273 GAGTAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAAT 332 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC-TTCGATAA 13094 | || || || | |||| || ||| | | ||| || | || || || || || Sbjct 333 AAGTTCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCATTTGA-AA 391 Query 13095 CTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACAT 13153 || || ||| | ||| || || ||| || || ||| | | | |||| Sbjct 392 TAATCTCCAAAATT-CTTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACAT 450 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||||||| ||||| ||||||||||| ||||| || || || ||||| ||||| Sbjct 451 GCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCA 510 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || || || || ||||| || |||||| || || || || ||||| || Sbjct 511 GGCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATA 570 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||| || || || |||| || ||||| |||| | | ||| | | ||||| Sbjct 571 CCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAATTATCTGAGC---CTATC 627 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||| |||||| | || |||| ||| || ||| ||||| ||||| Sbjct 628 CATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAATGTTTGTGATTGCTTTAAA- 686 Query 13394 AAATAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTA-TACATTT 13451 || || | ||| |||| | || || || ||||| || | ||| | || | | Sbjct 687 AAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAAT-GAGAAGAGAGTAGGTCT 745 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 |||| ||||| || |||||| |||| || || ||||| ||||||||||| | | | Sbjct 746 CTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTT 805 Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 | ||| | | | || |||| || || || || |||||| || ||||||||||| | Sbjct 806 AGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGA 865 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 |||| ||||| | ||||||||||| | |||||| || | ||| ||| ||| Sbjct 866 AAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCTT 925 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 || ||| | | ||| |||| |||||| | ||||| || |||| | | || | Sbjct 926 TAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGT 985 Query 13692 ACATCATCCATATATCCTTATA 13713 ||||| |||||||||| || || Sbjct 986 ACATCTTCCATATATCATTGTA 1007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430876066406088