Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq6873 132 6e-26 seq8537 102 1e-16 >seq6873 Length=3768 Score = 132 bits (146), Expect = 6e-26 Identities = 293/428 (68%), Gaps = 26/428 (6%) Strand=Plus/Plus Query 164534 ATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT 164593 ||||||| || ||| |||||||| || || |||||| |||||| |||| || || | Sbjct 869 ATGGACCACCAGGTACAGGTAAAACTTTGATAGCTCGACAAATTGCTAAAGCATTAAACT 928 Query 164594 C-GC-GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTG--AG 164649 || || || ||||||||| |||| |||||| |||| | || ||||| |||| || Sbjct 929 GTGCTGAGCCA--AAAATTGTTCATGGACCTGAAATATTCGATAAGTATGTTGGTGGAAG 986 Query 164650 TCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAA-GAAA--GCA 164706 | ||||| ||| |||| | || ||| || || ||| | || ||||| |||| | | Sbjct 987 TGAGAAGAAAAT--TAGAGATTTATTTGCTGACGCAGAAAATGAGCAAAAAGAAAAGGGA 1044 Query 164707 GGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAA---- 164762 | | | | || | ||||| | || | ||||||||||| ||||| |||| | Sbjct 1045 GATGAATC-AG--ATTTACACATCATAATCTTTGATGAGATTGATGCAATTTGTAGGTCT 1101 Query 164763 AAA------ACGT--GGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCT 164814 | | || | || | || | | ||||| ||||| ||||| || | || || Sbjct 1102 AGAGGATCTACTTAAGGAGGTACAGGTGTCCATGAAGCAGTAGTTAACCAACTCCTATCG 1161 Query 164815 AAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCT 164874 || ||||||||||| || ||||||||| || | | |||||||||||||| || Sbjct 1162 AAGATAGATGGTGTTGACAGCTTAAATAACATCCTTGTCATAGGTATGACCAACAGAAAG 1221 Query 164875 GATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGA 164934 || | |||||||| ||| | || ||||||| || ||||||||| | |||| ||| | Sbjct 1222 GACATGATTGATGAAGCTATGATAAGACCTGGGCGTTTAGAATTGCACTTAGAGATATCA 1281 Query 164935 TTACCCGA 164942 |||| || Sbjct 1282 CTACCTGA 1289 >seq8537 Length=3923 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||||| ||| ||| || | ||||||| ||||||| ||||| |||||| | Sbjct 857 GTTAAAATAAAAACAAGGTCCGTAAGAATACCTTAAATAGGAGATAAATTTGCTAGTAGG 798 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || | | ||||| || ||||||| ||| | ||||||||||||| || |||| | Sbjct 797 CATGGTTAGAAAGGAACGGTCGGTATGACCTATAGATAAGAAGATATGCCATTCACTAGA 738 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || ||||| ||||||||||| || || ||||| | || || ||||||| Sbjct 737 GAAGGAATTGTGCCTGATCTTATTATCAATCCTCATGCCATACCTAGCAGAATGAC 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595721214590400