Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3091 154 1e-32 seq3090 154 1e-32 seq3089 154 1e-32 seq14708 131 2e-25 seq11541 131 2e-25 seq3088 116 3e-21 >seq3091 Length=1223 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| |||||||||| | ||||| || | |||||| |||||||| | || | Sbjct 844 TTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGT 785 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| | ||| || || |||||||| | || || | |||||| |||| Sbjct 784 AGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGAT 725 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||| ||||| || || || ||||||||| ||| ||||| | | Sbjct 724 CGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGG 665 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| |||||||| | |||||| || ||||| ||||| Sbjct 664 GTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| |||||||||| | ||||| || | |||||| |||||||| | || | Sbjct 616 TTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGT 557 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| | ||| || || |||||||| | || || | |||||| |||| Sbjct 556 AGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGAT 497 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||| ||||| || || || ||||||||| ||| ||||| | | Sbjct 496 CGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGG 437 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| |||||||| | |||||| || ||||| ||||| Sbjct 436 GTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| |||||||||| | ||||| || | |||||| |||||||| | || | Sbjct 616 TTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGT 557 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| | ||| || || |||||||| | || || | |||||| |||| Sbjct 556 AGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGAT 497 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||| ||||| || || || ||||||||| ||| ||||| | | Sbjct 496 CGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGG 437 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| |||||||| | |||||| || ||||| ||||| Sbjct 436 GTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 ||||||||||||| || || || ||||| || ||||||||||| | |||||| || | | Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | ||| || || ||||| || | ||||| ||||||| ||||| || || Sbjct 776 AAT-GTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGG 718 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||||| || || || | ||| || |||||||| | | ||||||| | || || Sbjct 717 GATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAAC 658 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| | ||| || || ||||| | ||| Sbjct 657 ATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq14708 Length=579 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||||| || || || ||||| || |||||||| || | |||||| || Sbjct 459 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 400 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||| |||||| ||||||| ||||||| ||||| || ||| Sbjct 399 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 340 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || || |||||||| || || | | ||||||| | || || Sbjct 339 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 280 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| |||||||| | ||||| || ||||||| ||| Sbjct 279 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 233 Score = 125 bits (138), Expect = 6e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| |||||||| |||| ||| || ||||| || |||||||| |||| | ||| || Sbjct 237 TACATACCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAG 178 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || | ||| |||| ||| || | |||||| || | || || | ||| | |||| Sbjct 177 TC--TGATAATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGAT 120 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||||||||| || || ||||| || || | | || || | Sbjct 119 CAGGTGGAATACCTTCTTTGTCCTAGATCTTTGCTTTCACATTCTCAATGGTATCTGATG 60 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | || ||||| ||||||||||||||||| || ||||||| ||||| Sbjct 59 GCTCTACGTCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACATGC 3 >seq11541 Length=746 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||||| || || || ||||| || |||||||| || | |||||| || Sbjct 609 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 550 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||| |||||| ||||||| ||||||| ||||| || ||| Sbjct 549 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 490 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || || |||||||| || || | | ||||||| | || || Sbjct 489 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 430 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| |||||||| | ||||| || ||||||| ||| Sbjct 429 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 383 Score = 104 bits (114), Expect = 2e-17 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| |||||||| |||| ||| || ||||| || |||||||| |||| | ||| || Sbjct 387 TACATACCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAG 328 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || | ||| |||| ||| || ||||||||||| | || || | ||| | |||| Sbjct 327 TC--TGATAATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGAT 270 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| ||||| || || |||||| | | || || | | Sbjct 269 CGGGTGGGATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGG 210 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| ||||| ||||| || ||||| || || || | ||| Sbjct 209 GCTCAACATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACAT 155 >seq3088 Length=519 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||||| || || || ||||| || |||||||| || | |||||| || Sbjct 382 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 323 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||| |||||| ||||||| ||||||| ||||| || || Sbjct 322 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGG 263 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| ||||| || || || ||| | | || || | | | || || Sbjct 262 ATGCCCTCTTTGTCCTAAATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTCAACA 203 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| ||||| || ||||| || || || | ||| Sbjct 202 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACAT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448177759911840