Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq12968 212 7e-50 >seq12968 Length=2778 Score = 212 bits (234), Expect = 7e-50 Identities = 640/982 (65%), Gaps = 33/982 (3%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-----tttGACATAAT 21177 || || | || || |||||||| | ||||| || || ||| || ||| || | | Sbjct 95 TTGTTCAGAAGTCTGCATCTAAAGTGAAAATTTTTTCCTCTCTTCCACCTTTTACGT--T 152 Query 21178 TCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGA 21237 | || |||| ||| || | ||||| || || || || |||||||| ||| | ||| Sbjct 153 TGCC---TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGA 209 Query 21238 TATAGATTCCATAAAATCAAATGGATTTT-CAGATTTAAATATTTTATTACAACCCAGTT 21296 || |||||| | |||||||||||| || ||| | || || ||| || | Sbjct 210 AATCATTTCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACT-CCTAAAG 268 Query 21297 CTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATAC 21356 | | | || |||||| || ||||||| |||||||||| |||||| | | ||||||||| Sbjct 269 CAAAGAGTAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATAC 328 Query 21357 CGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA 21416 | || | || || || |||||| | ||| | ||| || | || || | Sbjct 329 CAATAAGTTCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCATTTG 388 Query 21417 CAATTATATTTATTATCCT------AGATGTACTAGGGGGATACAATAATTGTTTAAACA 21470 ||| || | | || || |||| | || || ||| |||||| | | Sbjct 389 AAATAATCTCCAAAATTCTTTCATTAGATATCTTATT---ATT---TAAGTGTTTATAGA 442 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 ||||||||||||||| |||| |||||||| || ||||| | ||||||| |||| Sbjct 443 GTAAACATGCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATG 502 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAA 21589 | | ||| ||||||||||| | ||| || | ||| || || | | || |||| ||||| Sbjct 503 TCAGACCAGGCATTAATCCGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAG 561 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || || || |||| ||||| ||||| ||||||| ||| | || | | || | | Sbjct 562 AAAAAGATACCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAATTATC-TGA 620 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATC--AATTGTATCAA 21707 || |||||||||| ||||||| |||||| || |||| | ||| | | Sbjct 621 GCC--TATCCATTTTAAGGCCCATTCGGCCTTT--TTAGCAACAACCGGAATGTTTGTGA 676 Query 21708 TAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNAC 21767 | ||||| ||||| | ||| || | | ||| || ||| | Sbjct 677 TTGCTTTAAAAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAG 736 Query 21768 TATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCT 21827 || | || || || || || || ||| || | |||||||||||| ||||| |||| Sbjct 737 AGTAGGTCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCT 796 Query 21828 CTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCAC 21887 | | | || | || | | || | || |||||| || ||| ||||||||||||| Sbjct 797 CAGGAATTTAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCAC 856 Query 21888 TGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTT 21947 | || || ||||| || | | || || ||||| | | ||| ||| | | ||||| Sbjct 857 TAGCAGCGAAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTT 916 Query 21948 TCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAG 22007 ||| ||| | ||| | | ||| |||| ||| |||| ||||| |||| ||| || Sbjct 917 CCCAGTCTTTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTT 976 Query 22008 CCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTAT 22067 | ||| ||||| |||| |||||||| ||| | || || ||||||||||| | |||| Sbjct 977 AATCTTTGTACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAG 1036 Query 22068 TTGATTCAACTAAAAGTGGTTC 22089 ||| ||||||| || || Sbjct 1037 GATTTTCCTCTAAAAGAGGCTC 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531766202502560