Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12968 235 7e-57 seq13015 215 6e-51 >seq12968 Length=2778 Score = 235 bits (260), Expect = 7e-57 Identities = 597/895 (67%), Gaps = 20/895 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||| ||||| || || | || || || || || || || ||| | ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| | ||||| ||||| ||||| || || | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | |||||| || || |||| ||||||| ||| | | | ||||||| || |||||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 33193 TTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | |||||| ||||| | || | | ||| ||| |||||| |||| |||| || ||||| Sbjct 337 TCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGG---ATGCAATAAATGTTTAAACATCAAACATGC 33308 || || | | |||| | | | || ||| |||||| | | |||||||| Sbjct 396 C--TCCAAAATTCT-TTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGC 452 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 ||||| ||||| || || ||||| || || ||||| || || || || || || Sbjct 453 AAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGG 512 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||||| || ||||| || | ||| || || | | |||||| || || || ||||| || Sbjct 513 CATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATACC 572 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG----TATCC 33484 ||| | ||||| || || | | ||| || |||| || | || || ||||| Sbjct 573 TTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTATCC 628 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAG 33543 | ||| ||||| |||||||| || ||| || || |||| | || || ||||| Sbjct 629 ATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAAA 687 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 || ||| ||| || | ||| | | || ||||| || | |||| || | || Sbjct 688 AGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTCT 747 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || |||||||| || || ||| | ||||||||| || ||||||||||| | ||| | Sbjct 748 GAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTAG 807 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 | ||| || || || | || |||||||| ||| |||||||| ||||| || || ||| Sbjct 808 ATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAAA 867 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATT 33782 || || | ||||| || ||||| | |||||| | | || | ||||| | ||| || || Sbjct 868 AAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT-TGAGTTTTTCCCAGTCTTT 926 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | ||| ||| || |||| ||| || | ||||| || | ||| | | ||| || Sbjct 927 AACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGTA 986 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| ||||| || |||| ||| ||| || || || ||||| | || |||||| Sbjct 987 CATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTT 1041 >seq13015 Length=2880 Score = 215 bits (238), Expect = 6e-51 Identities = 767/1185 (65%), Gaps = 24/1185 (2%) Strand=Plus/Minus Query 62636 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 ||||||||| || || |||||||| || | ||| ||||| ||||||| | | Sbjct 1891 ATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCA-A 1833 Query 62696 ATTTAAGAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 |||| || | || || | || |||| ||| | |||||| ||||| |||||||| || | Sbjct 1832 ATTTCAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGAC 1773 Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814 |||||| |||| |||||| | || || | || | ||| || || || || | Sbjct 1772 GGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTA 1713 Query 62815 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCCCATC 62872 ||| | ||||| ||| || | ||| | | ||||||| || | || Sbjct 1712 AATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCTACGATT 1653 Query 62873 TATTACAAACATGTTCAAGGCAACAGAT------GCCAGATTACAAACGGCTACCTCATT 62926 || |||| | | ||| || |||| || ||||||||||| || | |||| Sbjct 1652 CTTTGTTCACATAT-CTAGG-AAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATC 1595 Query 62927 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 62986 | | |||| | ||| ||| |||||| || | || || || ||||||| Sbjct 1594 TGGGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAATG 1535 Query 62987 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63046 | || || ||||| || |||||||| ||||| || ||| ||||||| |||||||| Sbjct 1534 CTATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTC 1475 Query 63047 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 63106 |||||||| ||||| |||| ||| | | | || |||| || | || | | Sbjct 1474 TTGTTGAGATTCAATAATAGCTTCCCAAA-GTTTTTAGGCTTTGATA---ACTTTTTTGC 1419 Query 63107 CCTTTC--TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 |||| | |||||| ||| | | ||| | ||| || || ||||| |||||| | Sbjct 1418 CCTTGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTT 1359 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 || || || |||| ||||| | | | ||| ||||| | | |||||||| | Sbjct 1358 GTAAGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTAT 1299 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282 ||||||| ||||| || | ||| | ||| ||| |||||||| | ||| | |||||| | Sbjct 1298 TCATAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTT 1239 Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342 | || ||||| || | || || | | || ||||| |||||| ||||| | | Sbjct 1238 TACCGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGAT 1179 Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402 | ||||| | || || ||| || || || || | |||||||| || | || Sbjct 1178 AAATGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCAT 1119 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462 | |||| | ||||||||||| | || || || ||||| || || ||||| Sbjct 1118 TGAAAACCTTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAAG 1059 Query 63463 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63522 || || | ||| | |||||| || || ||||| || || ||||| |||| Sbjct 1058 AGCCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTA 999 Query 63523 ATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 | || | || | | || || |||||||| | ||| ||| || |||| | | | Sbjct 998 AAGCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAA 939 Query 63583 GAAAACAGCTAGACATTTGGTGAC--GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 | ||||| |||||||| || | | | || || | || ||||| ||||||| || Sbjct 938 GGAAACATGAAGACATTTA-TGGCTTGGGT-GTACCAGAGTTGAATAAAGTAGGAGTGGC 881 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 || ||||||||||| || || | || || || || ||||||||| | || ||| Sbjct 880 ATGAGTAAACCATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATT 821 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 || || ||||||| | || | ||| ||||| | ||||||| ||||||||| || Sbjct 820 TTTGTGGATTCCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCC 761 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 | | ||| | || ||||| || || || |||||||| ||||| Sbjct 760 ATGAACTTTGAGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62314 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62373 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 62374 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62433 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 62434 TCGGCATAGGTGCCAC 62449 | |||||||| || || Sbjct 2096 TTGGCATAGGAGCAAC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622789563211040