Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3539 167 6e-36 seq12968 156 1e-32 >seq3539 Length=1811 Score = 167 bits (184), Expect = 6e-36 Identities = 349/515 (68%), Gaps = 19/515 (4%) Strand=Plus/Plus Query 111290 AATGCGTTTTAATCTGTCA-ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGA 111348 |||| | ||| |||| ||| | ||||| |||||||| ||||| ||| || ||||| Sbjct 931 AATGAGATTTGATCTATCAGAGTCATTC-CCACTTCTAACAACTAAGGATGTATTTTGGA 989 Query 111349 AGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTG 111408 ||| ||| || |||||| | ||||| || || || ||||| || | | Sbjct 990 GGGGTGTTGCTGAGGAACTTTTCTGGTTCATGAAAGGTGACACTAATGCCAAACATTTAT 1049 Query 111409 CAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG 111468 ||| || || | | |||||||||||| || | || | | ||||||||||||| | | Sbjct 1050 CAGATAAGAAGATTAGAATTTGGGATGGGAACGCTTCTAGAGCCTTTCTAGATTCACTCG 1109 Query 111469 GTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACT 111528 |||| ||| | |||||| | || | || ||||| || || || |||||| | |||| Sbjct 1110 GTCTCACCGAAAGAGAAGAATGGGACTTAGGCCCAGTATATGGCTTCCAATGGAGACACT 1169 Query 111529 TTGGTGCAGACTACAAAACCATGCACGACTCAT---ATGATTCACA---------GGGAA 111576 |||| ||||| || || || ||||| || |||| | ||| | | ||| Sbjct 1170 TTGGCGCAGAATATAATACTATGCATGATTCATTTGAAGATATATAAGAGCGTGGGGGCG 1229 Query 111577 CTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTA 111636 ||| ||||| | | || || || | ||||| ||| | ||| || | | |||| Sbjct 1230 TCGATTAATTAGAATAGGTGATAAATTAGATTAAAAACCAACCAGAATCAAGAAGAATTA 1289 Query 111637 TTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTA 111696 | ||||| |||||||| ||||| | || | |||||||| |||||||| || ||| || Sbjct 1290 TAATGAGCGCATGGAATCCAAAAGATCTGAAGAAAATGGCTCTTCCACCCTGCCAT-GTA 1348 Query 111697 TGTGC-CAGTTTTATGT---ACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCT 111752 ||| || || ||||| | ||| | ||| ||||| ||||||||||| | ||| Sbjct 1349 CTTGCACAATTCTATGTGTCAGCAGACAATAAGCTATCATGTCAAATGTATCAAAGGTCT 1408 Query 111753 GCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 |||||| |||||||| || || || ||||| || Sbjct 1409 TGTGATATGGGTCTTGGAGTGCCATTCAATATAGC 1443 >seq12968 Length=2778 Score = 156 bits (172), Expect = 1e-32 Identities = 494/761 (65%), Gaps = 25/761 (3%) Strand=Plus/Minus Query 22192 GAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTT 22251 ||| |||| ||||| || || |||| || || || ||| | || || |||||| || Sbjct 899 GAAAAACACTTTATTAAGCATGTTCTTGCCTTTTTCGCTGCTAGTGATGGAATAGTTCTT 840 Query 22252 GAGAATCTAG-TGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTA 22310 |||||| | | | | || |||| ||||||| || || ||||| ||||| || || Sbjct 839 GAGAATTTGGCTTAAAGGTTCTGCA-CTGAAATCTAAATTCCTGAGGCTAGATGCTTTTA 781 Query 22311 TGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTAT-------GATGC 22363 || | |||||||||| || || ||||| | || || || ||| | ||| | Sbjct 780 CGGATTTTAAATGATGATGGAGAACATTCACTCAGAGACCTACTCTCTTCTCATTGATAC 721 Query 22364 -TACAGTCACTCGT--AGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCA 22420 |||| ||||| | | ||||||||||| | | || || || | Sbjct 720 CTACA-TCACTGATCCATAAGATAAAGACTTCC---------TTTTTAAAGCAATCACAA 671 Query 22421 CCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTT 22480 ||||| || || ||||| || ||||| | |||||||| | || || Sbjct 670 ACATTCCGGTTGTTGCTAAAAAGGCCGAATGGGCCTTAAAATGGATAGGCTCAGATAATT 611 Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 | | || ||| | | | ||||| |||| ||||||| || || || || || ||| Sbjct 610 CCTATGCCGAAAGATTAGTAGCATTCGCTGCTATTGAAGGTATCTTTTTCTCAGGCTCAT 551 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 | ||||| ||||| ||| | || || || | | | ||||| ||||| || || |||| Sbjct 550 TCTGTGCTATCTTCTGGATGAAGAAGCGCGGATTAATGCCTGGTCTGACATTCAGTAATG 491 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 | | || ||| ||||||| || | || || |||||||| ||| | || ||| || | Sbjct 490 AACTCATAAGCAGAGATGAAGGCATGCACACTGATTTTGCATGTTTACTCTAT---AAAC 434 Query 22661 ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC 22720 | | | | |||| | | |||||| | | || |||||| ||||||| || || Sbjct 433 ACTTAAATAATAAGATATCTAATGAAAGAATTTTGGAGATTATTTCAAATGCTGTATAAA 374 Query 22721 TTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAAT 22780 ||||| ||| | ||| || | ||||| || |||||||| ||| | | | Sbjct 373 TTGAATTAGAGTTTGTATGCTCAGCTCTCCCAGTTGAACTTATTGGTATGAATTCTAACT 314 Query 22781 CAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAA 22840 |||| | |||||| ||||||| || ||| | ||| | || | | || | | Sbjct 313 TAATGGCTCAATATATATAATTTGTGGCTGATAGACTACTCTTTGCTTTAGGAGTACCTA 254 Query 22841 AGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGA 22900 || | || || || | ||||||||||| ||||||||| | |||||||| ||| |||| Sbjct 253 AGTACTACAATGTGTTAAATCCATTTGAGTGGATGGAAATGATTTCACTACCAGGCAAGA 194 Query 22901 CCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 | || ||||| || || ||||| || ||||| |||| ||| Sbjct 193 CAAACTTCTTTGAGAAGAGAGTCGGGGAATATTAAAAGGCA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303015541030808