Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11541 131 1e-25 seq3089 131 1e-25 seq3091 129 5e-25 seq3090 129 5e-25 seq3088 125 6e-24 seq14708 122 7e-23 >seq11541 Length=746 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| || | || || |||||| | ||||| ||| | || ||| | || || ||| || Sbjct 152 AAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCC 211 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | |||||| |||||| ||||| || ||||| || |||||| Sbjct 212 TCAGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCGAT 271 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 ||| ||||||| || | || || || || || ||||||| |||| | | | | || || Sbjct 272 CAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAA-CATTATCAGACTA 330 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| |||||||||||||| | || ||||| || ||||| |||||||| Sbjct 331 CAACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 381 Score = 116 bits (128), Expect = 3e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCAT 24058 || || ||||||||||||||||| | ||||| | || || || |||| | ||||| || Sbjct 392 TTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGA-GCCATCTGACACAAT 450 Query 24059 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACT 24118 || | || ||| ||| || || || ||||| || || ||||||||| | ||| | Sbjct 451 TGAAAATGTTAAAGCAAAAATCTAAGATAAGGAAGGTATTCCACCCGATCAATAAAGATT 510 Query 24119 GATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAA 24177 ||| | | || || | || ||||||| || ||| | | | || ||||||||||| | Sbjct 511 GATCTTTGCAGGAAAATAGCTTGAAGATGGAAG-AACTTTATCTGACTATAACATTCAGA 569 Query 24178 AAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| || | |||||||| ||||||||||||||||| Sbjct 570 AGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 609 >seq3089 Length=958 Score = 131 bits (144), Expect = 1e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || || || || ||||| || | || ||| | || || ||| ||| Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAG-CCAT 667 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | |||||||| ||| | ||||| |||||| || || || || || || ||||||| Sbjct 668 CTGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATC 727 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTAT 24167 || | ||| |||| | || || || ||||| ||||||| |||| | | | | || ||| Sbjct 728 AATAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGAA-CATTATCTGACTAT 786 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || | |||||||| ||||||||||||||||| Sbjct 787 AACATTCAAAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 836 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || |||||||| | || || | || || || || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || || ||||||||||||| |||| | || || || || Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || ||||| || ||||| | ||||| || | ||||||||||| ||| | ||| Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGGAATGTAA 615 Score = 120 bits (132), Expect = 3e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 23984 AAACAAAA--TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||||||| || | | || || || || ||||| || || | ||||| | || || Sbjct 145 AAACAAAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTA 204 Query 24042 GAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 ||| ||| | |||||||| ||| | ||||| ||||| ||||| |||||||| || Sbjct 205 GAG-CCATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCC 263 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 ||||||||||| ||||| || | | ||| || ||||| ||||||| ||||| | | || Sbjct 264 ACCCGATCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAG 323 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| | || || || || | || |||||||| ||| | ||||| || Sbjct 324 CGACTACAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGACTCAGAGGTGG 380 >seq3091 Length=1223 Score = 129 bits (142), Expect = 5e-25 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 23984 AAACAAAA--TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||||||| || | | || || || || ||||| || || | ||||| | || || Sbjct 145 AAACAAAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTA 204 Query 24042 GAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 ||| ||| | |||||||| ||| | ||||| ||||| ||||| ||||| || || Sbjct 205 GAG-CCATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCC 263 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 |||||||||||| ||||| || | || ||||||||| | ||||||| ||||| | || Sbjct 264 TCCCGATCAACAAAGACTCATCTTCGCTGGCAAGCAATTGGAAGATGGCAGAACCCTCTC 323 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| ||||| | || || ||||| | ||| |||| || ||| | |||||||| Sbjct 324 CGATTACAACATCTAGAAGGAGTCTACTCTCCATCTAGTTTTGAGACTTAGAGGAGG 380 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || |||||||| | || || | || || || || Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 670 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 729 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || || ||||||||||||| |||| | || || || || Sbjct 730 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 789 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || ||||| || ||||| | ||||| || | ||||||||||| ||| | ||| Sbjct 790 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGGAATGTAA 843 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || || || | ||||| || | || || |||| || || ||| | Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAA-CCATC 440 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||| || || |||||||| || |||||||| Sbjct 441 AGACACTATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCA 500 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | ||| || ||||| ||||||| ||||| | | ||||| || || Sbjct 501 ACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAA 560 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| | || || || || | || |||||||| ||| | ||||| || Sbjct 561 CATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGACTCAGAGGTGG 608 >seq3090 Length=995 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || |||||||| | || || | || || || || Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || || ||||||||||||| |||| | || || || || Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || ||||| || ||||| | ||||| || | ||||||||||| ||| | ||| Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGGAATGTAA 615 Score = 120 bits (132), Expect = 3e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 23984 AAACAAAA--TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||||||| || | | || || || || ||||| || || | ||||| | || || Sbjct 145 AAACAAAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTA 204 Query 24042 GAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 ||| ||| | |||||||| ||| | ||||| ||||| ||||| |||||||| || Sbjct 205 GAG-CCATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCC 263 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 ||||||||||| ||||| || | | ||| || ||||| ||||||| ||||| | | || Sbjct 264 ACCCGATCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAG 323 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| | || || || || | || |||||||| ||| | ||||| || Sbjct 324 CGACTACAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGACTCAGAGGTGG 380 >seq3088 Length=519 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| || | || || |||||| | ||||| ||| | || ||| | || || ||| || Sbjct 153 AAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCC 212 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | || ||| |||||| |||||||| ||||| || |||||| Sbjct 213 TCAGATACAATTGAAAACGTGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCGAT 272 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 ||| | ||| |||| | | || || | || ||||||| |||| | | | | || || Sbjct 273 CAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAA-CTTTATCTGACTA 331 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| || ||||| || | |||||||| ||||||||||||||||| Sbjct 332 TAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 382 >seq14708 Length=579 Score = 122 bits (134), Expect = 7e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCAT 24058 || || ||||| | |||||||| | |||||| | || || ||| ||| | || ||||| Sbjct 14 TTCGTTAAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAG-CCATCAGATACCAT 72 Query 24059 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACT 24118 ||| | || ||| |||||| ||||||||||| || || || |||||| ||||||| Sbjct 73 TGAGAATGTGAAAGCAAAGATCTAGGACAAAGAAGGTATTCCACCTGATCAATAGAGACT 132 Query 24119 GATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAA 24177 || | || || || || | ||||||| || ||| | | | || || ||||| ||| Sbjct 133 CATATTCGCTGGTAAACAGTTAGAAGATGGAAG-AACATTATCAGACTACAACATCTAAA 191 Query 24178 AAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| | || ||||| || ||||| |||||||| Sbjct 192 AAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 231 Score = 116 bits (128), Expect = 3e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCAT 24058 || || ||||||||||||||||| | ||||| | || || || |||| | ||||| || Sbjct 242 TTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGA-GCCATCTGACACAAT 300 Query 24059 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACT 24118 || | || ||| ||| || || || ||||| || || ||||||||| | ||| | Sbjct 301 TGAAAATGTTAAAGCAAAAATCTAAGATAAGGAAGGTATTCCACCCGATCAATAAAGATT 360 Query 24119 GATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAA 24177 ||| | | || || | || ||||||| || ||| | | | || ||||||||||| | Sbjct 361 GATCTTTGCAGGAAAATAGCTTGAAGATGGAAG-AACTTTATCTGACTATAACATTCAGA 419 Query 24178 AAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| || | |||||||| ||||||||||||||||| Sbjct 420 AGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429829924577820