Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13015 226 4e-54 seq12968 199 5e-46 >seq13015 Length=2880 Score = 226 bits (250), Expect = 4e-54 Identities = 771/1183 (65%), Gaps = 20/1183 (2%) Strand=Plus/Minus Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 ||||||||| || || |||||||| || | ||| ||||| ||||||| | | Sbjct 1891 ATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCA-A 1833 Query 62551 ATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 |||| || | || || | || |||| ||| | |||||| ||||| |||||||| || | Sbjct 1832 ATTTCAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGAC 1773 Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669 |||||| |||| |||||| | || || | || | ||| || || || || | Sbjct 1772 GGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTA 1713 Query 62670 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCCCAT- 62726 ||| | ||||| ||| || | ||| | | ||||||| || | || Sbjct 1712 AATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCTACGATT 1653 Query 62727 CTAT-TACAAACATGTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAG 62783 || | | || | || | | | | | || || ||||||||||| || | |||| | Sbjct 1652 CTTTGTTCACATATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATCTG 1593 Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843 | |||| | ||| ||| |||||| || | || || || ||||||| | Sbjct 1592 GGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAATGCT 1533 Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903 || || ||||| || |||||||| ||||| || ||| ||||||| |||||||| Sbjct 1532 ATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCTT 1473 Query 62904 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCT 62963 |||||||| ||||| |||| ||| | | | || |||| ||| ||| | | || Sbjct 1472 GTTGAGATTCAATAATAGCTTCCCAAA-GTTTTTAGGCTTTG--ATAACTTTTTTGCCCT 1416 Query 62964 TTTCT-CTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63020 | || ||||| ||| | | ||| | ||| || || ||||| |||||| | | Sbjct 1415 TGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGTA 1356 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 || || |||| ||||| | | | ||| ||||| | | |||||||| |||| Sbjct 1355 AGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTCA 1296 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 |||| ||||| || | ||| | ||| ||| |||||||| | ||| | |||||| || | Sbjct 1295 TAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTAC 1236 Query 63141 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 | ||||| || | || || | | || ||||| |||||| ||||| | || | Sbjct 1235 CGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAAA 1176 Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260 |||| | || || ||| || || || || | |||||||| || | ||| Sbjct 1175 TGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTGA 1116 Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCTGAGATATAGCTT 63319 |||| | ||||||||||| | ||||| || ||| ||||| || ||| ||||| Sbjct 1115 AAACCTTTAACATTGGAATTAAGCCATTAGA-GTAGCCATTAGTGCCTTTAATATAAGAG 1057 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || || | ||| | |||||| || || ||||| || || ||||| ||||| Sbjct 1056 CCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAA 997 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || | || | | ||||| ||||| || | ||| ||| || |||| | | || Sbjct 996 GCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGG 937 Query 63440 AAACAGCTAGACATTTGGTGAC--GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 ||||| |||||||| || | | | || || | || ||||| ||||||| || | Sbjct 936 AAACATGAAGACATTTA-TGGCTTGGGT-GTACCAGAGTTGAATAAAGTAGGAGTGGCAT 879 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 ||||||||||||| || || | || || || || ||||||||| | || ||| || Sbjct 878 GAGTAAACCATTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTT 819 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 || ||||||| | || | ||| ||||| | ||||||| ||||||||| || | Sbjct 818 TGTGGATTCCTATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCAT 759 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 | ||| | || ||||| || || || |||||||| ||||| Sbjct 758 GAACTTTGAGTAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62169 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62228 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 62229 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62288 ||| |||| || ||||| | || ||||| || || || ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 62289 TCGGCATAGGTGCCAC 62304 | |||||||| || || Sbjct 2096 TTGGCATAGGAGCAAC 2081 >seq12968 Length=2778 Score = 199 bits (220), Expect = 5e-46 Identities = 593/897 (66%), Gaps = 22/897 (2%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||| ||||| || || | || || || || || || || ||| || ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| | || |||||||| ||||| || || | ||| || || | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | |||||| || ||||||| ||||||| ||| | | | ||||||| || |||||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 32550 TTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | |||||| ||||| || | | ||| ||| |||||| | || || | || ||||| Sbjct 337 TCAACTGGGAGAGCTG-AGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 32609 AGATCTTACTGTTTCTTCACTCGGTGGAT-ACAAT--AAATGTTTAAACATCAAACATGC 32665 || | | | |||| | | | | | || || |||||| | | |||||||| Sbjct 396 C--TCCAAAATTCT-TTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGC 452 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||| ||| | || || ||||| || || | ||| || || || || || || Sbjct 453 AAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGG 512 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTC 32784 ||||| || ||||| || | ||| || || | | || ||||| || || || || || | Sbjct 513 CATTAATCCGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAGAAAAAGATAC 571 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG----TATC 32840 |||| | || || || || | | ||| || |||| || | || || |||| Sbjct 572 CTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA---GGAATTATC-TGAGCCTATC 627 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT-ATAGCATTAAA 32899 || ||| ||||| |||||||| || ||| || || || | | || || ||||| Sbjct 628 CATTTTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAA 686 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || ||| ||| || | ||| | | || |||||||| | |||| || | || Sbjct 687 AAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTC 746 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || |||||||| || || ||||| ||||||||| |||||||||||||| | ||| | Sbjct 747 TGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTA 806 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 | ||| || || || | || || ||||| ||| |||||||| ||||| || || || Sbjct 807 GATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAA 866 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCAT 33138 ||| || | ||||| || ||||| | |||||| | | || | ||||| | ||| || | Sbjct 867 AAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT-TGAGTTTTTCCCAGTCTT 925 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 | | ||| ||| || || | ||| || | ||||| || | ||| | | ||| | Sbjct 926 TAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGT 985 Query 33199 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 |||| ||||| || |||| ||| || || || || ||||| | || ||||||| Sbjct 986 ACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633471659422400