Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3091 102 7e-17 seq3090 102 7e-17 seq14708 95.1 1e-14 seq3089 91.5 1e-13 seq10904 86.0 5e-12 seq12652 84.2 2e-11 seq6615 84.2 2e-11 >seq3091 Length=1223 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 837 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 896 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | || || || | ||| || || || || || ||||| || | Sbjct 897 TGACACCATTGAGAATGTCAAGGCCAAGATTCA-AGATAAGGAGGGTATCCCACCCGATC 955 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 || | | | || || || || || ||||| ||||||| | ||| | ||| || | Sbjct 956 AATAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATA 1015 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 1016 ACATCCAAAAGGAGTCAACTCTCCATTTGGTGCTCAGACTAAGAGGTGGA 1065 >seq3090 Length=995 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 668 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | || || || | ||| || || || || || ||||| || | Sbjct 669 TGACACCATTGAGAATGTCAAGGCCAAGATTCA-AGATAAGGAGGGTATCCCACCCGATC 727 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 || | | | || || || || || ||||| ||||||| | ||| | ||| || | Sbjct 728 AATAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATA 787 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 788 ACATCCAAAAGGAGTCAACTCTCCATTTGGTGCTCAGACTAAGAGGTGGA 837 >seq14708 Length=579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || || ||| | || || || |||| || | || || ||| | || Sbjct 5 ATGTAGATCTTCGTTAAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAGCCATCA 64 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| |||| ||| ||| ||||||||||| ||||||||||| ||| Sbjct 65 GATACCATTGAGAATGTGAAAGCAAAGATCTAGGACAAAGAAGGTATTCCACCTGATCAA 124 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || || || ||||| |||||||||| | || | || ||||| Sbjct 125 TAGAGACTCATATTCGCTGGTAAACAGTTAGAAGATGGAAGAACATTATCAGACTACAAC 184 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||| || |||| ||||| | || |||||||||| Sbjct 185 ATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 231 >seq3089 Length=958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 668 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | || || || | ||| || || || || || ||||| || | Sbjct 669 TGACACCATTGAGAATGTCAAGGCCAAGATTCA-AGATAAGGAGGGTATCCCACCCGATC 727 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 || | | | || || || || |||||| | ||||||| | || | || || | Sbjct 728 AATAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGAACATTATCTGACTATA 787 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| ||||| || | |||||||| |||| | |||||||| Sbjct 788 ACATTCAAAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 836 >seq10904 Length=2968 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 25124 GATTA-TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 ||||| ||||||| ||||||||| | ||| ||| ||| ||| || || || || | Sbjct 782 GATTAATTTTTGCAGGCAAACAACTTGAAAATGGAAATACTCTGGCAGAATATAAAATCC 723 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATACTATT 25241 |||||||||| || ||||||||||| | || |||||||||||| || | | |||||| Sbjct 722 AAAAAGAATCTACTTTACATTTAGTGTTGAGACTAAGAGGAGGAGGTTGTGAAACTATT 664 >seq12652 Length=3123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25097 AGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 ||| || |||||||||||| || | | | |||||||| ||||| || | ||||||| Sbjct 2297 AGAGGGTATTCCACCTGACTAATAAAGATTGATTTTTGCAGGCAAGTAACTTGAAGATGG 2356 Query 25157 TCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 | | ||| | | ||||| || ||| | || ||||| || | |||||||| || || || Sbjct 2357 TAGAACTTTAGCAGATTATAACATTAAGAATGAATCTACCTTGCATTTAGTTCTGAGACT 2416 Query 25217 AAGAGGAGG 25225 ||||||||| Sbjct 2417 AAGAGGAGG 2425 >seq6615 Length=3019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25097 AGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 ||| || |||||||||||| || | | | |||||||| ||||| || | ||||||| Sbjct 2193 AGAGGGTATTCCACCTGACTAATAAAGATTGATTTTTGCAGGCAAGTAACTTGAAGATGG 2252 Query 25157 TCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 | | ||| | | ||||| || ||| | || ||||| || | |||||||| || || || Sbjct 2253 TAGAACTTTAGCAGATTATAACATTAAGAATGAATCTACCTTGCATTTAGTTCTGAGACT 2312 Query 25217 AAGAGGAGG 25225 ||||||||| Sbjct 2313 AAGAGGAGG 2321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433221087690860