Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12968 159 4e-34 >seq12968 Length=2778 Score = 159 bits (176), Expect = 4e-34 Identities = 419/632 (66%), Gaps = 13/632 (2%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 || || | ||| || ||||| || || || | ||||| |||| ||| | ||||| Sbjct 436 TTATAGAGTAAACATGCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTA 495 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 |||||||| | ||| || | | ||| || ||||| | ||| || || | | || || | Sbjct 496 CTGAATGTCAGACCAGGCATTAATCCGCGCTTCTTCATCCAGAAGATAGCA-CAGAATGA 554 Query 93200 -CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || ||||| |||||||| | || || ||||| || | | ||||||| | Sbjct 555 GCCTGAGAAAAAGATACCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCATA------ 608 Query 93259 GGAATTA-CTG--CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 ||||||| ||| | ||||||||||| ||||| ||||| ||||| || | | | | Sbjct 609 GGAATTATCTGAGCCTATCCATTTTAAGGCCCATTCGGCCTTTTTAGCAACA-ACCGGAA 667 Query 93316 TGTTT-CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 ||||| ||| || ||||| ||| | ||| || | | ||| ||||| ||||| | Sbjct 668 TGTTTGTGATTGCTTTAAAAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAA 727 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | | ||||| || | || || || | |||||||| |||| |||||||| || | Sbjct 728 TGAGAAGAGAGTAGGTCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGC 787 Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 ||||||| || | || | | ||| | || || | | | ||| ||| |||| Sbjct 788 ATCTAGCCTCAGGAATTTAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTA 847 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT 93554 | ||||| || || ||||| || | | |||||| ||||| ||||| ||| |||| | Sbjct 848 TTCCATCACTAGCAGCGAAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGT 907 Query 93555 TAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 | || || ||||| || | ||| | | | || | ||| || ||||||| || Sbjct 908 TGAGTTTTTCCCAGTCTTTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGC 967 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 | || | | ||||||||| | |||||| || | ||| || || ||||| |||| Sbjct 968 AAGCCATTTAATCTTTGTACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAA 1027 Query 93675 AACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | || ||||| || || | || | |||||| Sbjct 1028 AGCGGTTAGGATTTTCCTCTAAAAGAGGCTCT 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556719886374560